Template-based Modeling Results for LOMR_ECOLI

Submitted Primary Sequence

>Length 164
MRNRWFSVMVGPSVRVNEWFSAYAMAGMAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGPGSGDWRTDGFIVGVGYKFMLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGPGSGDWRTDGFIVGVGYKF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRNRWFSVMVGPSVRVNEWFSAYAMAGMAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGPGSGDWRTDGFIVGVGYKFMLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGPGSGDWRTDGFIVGVGYKF
CCCEEEEEEEEEEEEECCEEEEEEEEEEEEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEEEEECCCCEEECCEEEEEEEEEEECCCCCCCCCCCCEEEECEEEECCCCCEEEEEEECCCCCCCEEECCEEEEEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRNRWFSVMVGPSVRVNEWFSAYAMAGMAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGPGSGDWRTDGFIVGVGYKFMLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGPGSGDWRTDGFIVGVGYKF
55321100100000101110000000000001021223210202233132332221233142231100000001001131000000020012121102000000000001212332432321000000010111310000001211111211020000000133
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRNRWFSVMVGPSVRVNEWFSAYAMAGMAYSRVSTFSGDYLRVTDNKGKTHDVLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGPGSGDWRTDGFIVGVGYKFMLTGSDDGRHSNTSLAWGAGVQFNPTESVAIDIAYEGPGSGDWRTDGFIVGVGYKF
1	MUSTER	3qraA	0.215	0.793	1.322	threading_1	LDKNPRGFNLKYRYEFNNDWGVIGSFAQTRRGFEESVLIDGDFK---------------------YYSVTAGPVFRINEYVSLYGLLGAG-HGKAKFSS------------FGQSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYRF
2	SPARKS	1qj8a	0.341	0.555	3.689	threading_2	NKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTE-----------------YPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF--------------------------------------------------------
3	PROSPECT2	3qraA	0.256	0.762	1.332	threading_3	MEGES-----------------SISIGYAQSRVKE----------------------DGYKLDKNPRGFNLKYRYEFNNDWGVIGSFAQSVLIDGDFKYYSVTAGPVFFSSFGQSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYRF
4	PPA-I	1q9fA	0.330	0.555	3.295	threading_4	NKNQYYGITAGPAYRINDWASIYGVVGVGYGKF-----------------QTTEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF--------------------------------------------------------
5	HHPRED-l	1orm_A	0.341	0.555	3.950	threading_5	NKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTE-----------------YPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF--------------------------------------------------------
6	HHPRED-g	1orm_A	0.341	0.555	3.496	threading_6	NKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTE-------------------------------------------------------------------------YPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF
7	SP3	1qj8a	0.341	0.555	3.151	threading_7	NKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQTTE-----------------YPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF--------------------------------------------------------
8	SAM-T99	3qraA	0.360	0.543	7.039	threading_8	-DFKYYSVTAGPVFRINEYVSLYGLLGAGHGKAKFSSFG------------------QSESRSKTSLAYGAGLQFNPHPNFVIDASYEYSKLDDVKVGTWMLGAGYRF--------------------------------------------------------
9	MUSTER	1q9fA	0.197	0.805	1.279	threading_9	QMNKMGGFNLKYRYEEDNS-PLGVIGSFTYTE-----------------KSRTASSGDYNKNQYYGITAGPAYRINDWASIYGVVGVGYGKFQT--------------TEYPTYKNDTSDYGFSYGAGLQFNPMENVALDFSYEQSRIRSVDVGTWIAGVGYRF
10	SPARKS	3aeha	0.140	1.000	1.118	threading_10	FTDHYTLLQMGADRKHELDLFTGVMATYTDTDASADLYSYASGLFRSGDLNFAGAGKQNFRSHSLYAGAEVGYRYHLTDTTFVEPQAELVWGGQNSVNPLVGRTGVVSGKTFSGKDSRKDSRMLYGVGLNARFGDNTRLGLEVERSAFGKYNTDAINANIRYSF

Predicted Tertiary Structure


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TM-score=0.661 to 1q9fA SCOP code=f.4.1.1	TM-score=0.540 to 1q9fA SCOP code=f.4.1.1	TM-score=0.470 to 1q9fA SCOP code=f.4.1.1	TM-score=0.552 to 1q9fA SCOP code=f.4.1.1	TM-score=0.501 to 1q9fA SCOP code=f.4.1.1