Template-based Modeling Results for LOLC_ECOLI

Submitted Primary Sequence

>Length 399
MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGDQIRVMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGYEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKLPEGSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGDQIRVMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGYEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKLPEGSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE
CCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCEEEECCCCCCCHHHHHHHHHCCCCCCEEEEEEEEEEEEEECCEEEEEEEEEECHHHHHHHHHHHHCCCCCCCCCCCCEEEECHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCEEEEECHHHHHHHHCCCCCCEEEEEEECCCHHHHHHHHHHHCCCCEEEEEHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGDQIRVMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGYEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKLPEGSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE
552111110000002222234102000000100101010011011211221132003200111110001132122213200210141320220010010200021241110000100122112100101221332323223100000220012011331120100012223213222121221020000011223121100001030003014232220000102032222021002231331020010212113102002112100000000000000000000001101211110000211202122001000010000000000000000000000011002011100211100010101100000000000000010000021121211201423
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MYQPVALFIGLRYMRGRAADRFGRFVSWLSTIGITLGVMALVTVLSVMNGFERELQNNILGLMPQAILSSEHGSLNPQQLPETAVKLDGVNRVAPITTGDVVLQSARSVAVGVMLGIDPAQKDPLTPYLVNVKQTDLEPGKYNVILGEQLASQLGVNRGDQIRVMVPSASQFTPMGRIPSQRLFNVIGTFAANSEVDGYEMLVNIEDASRLMRYPAGNITGWRLWLDEPLKVDSLSQQKLPEGSKWQDWRDRKGELFQAVRMEKNMMGLLLSLIVAVAAFNIITSLGLMVMEKQGEVAILQTQGLTPRQIMMVFMVQGASAGIIGAILGAALGALLASQLNNLMPIIGVLLDGAALPVAIEPLQVIVIALVAMAIALLSTLYPSWRAAATQPAEALRYE
1	PROSPECT2	1txgA	0.095	0.764	1.423	threading_1	MAGAMGSALSVPLVDNG----------------------------------------------NEVRIWGTE---FDTEILKSISAGREHP--------------RLGVKLNGVEIFWPEQLEKCL------------ENAEVVLLGLPVMSRILPYLKDQYIVL-----ISKGLIDFDNSVLTVPEAVWRLKHDLRERTAITGPAIAREVAKRMP---TTVVFSSPSESSANKMKEIFETEYFGVEV--TTDIIGTEITSALKNVYSIAIAWIRGYESRKSNAKGVIATRAINEMAELIEILGGDRETAFGSGFGDLIATFRGGRNGMLGELLGKGLSIDEAMEELERRGVGVV--------EGYKTAEKAYRLSLLDSIYRVLY-EGLKVEEVLFFK
2	PPA-I	3ftjA	0.143	0.474	1.159	threading_2	----------------------------------------------------QKILENIRGIGTNMTIFNGNGFGDRISDANTLSKQSYIQSVTPNTSSSGILVVGNSFTSANLYGIGEQYFDVEGLKLKQGRLLTVDQSNQVVVLDESAKKAIENPLGKTVIFN---------------KRPFRVIGVVSDQSL----NLYSPYSTVLNKI-TGGSRIGSITVKISDDVNSTVAEKSLTKKDFFIMNSDTIKQTIENTTG------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1ejlI	0.093	0.840	1.413	threading_3	GTVNLQATQAARKLLSREKQPPIDNIIRAGLIPSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPGDGSAFRDLVIKHGAIDPLLALLAVPDLSTL------------ACGYLRNLTWTLSNLCRNKNPAPPLDAVILPTLVRLLHHNDPE------------------------------------------VLADSCWAISYLTDGPNERIEMVVKK--GVVPQLVKLLGAT--------ELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIWTMSNITAGRQDQIQQVVNHGLVPFLVGVLAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAESIMIEECGGLDKIEFS
4	HHPRED-l	3ftj_A	0.133	0.471	3.475	threading_4	----------------------------------------------------QKILENIRGIGNTMTIFNGNDQNLKISDANTLSKQSYIQSVTPNTSSSGILVVGNKSFTSNLYGIGEQYFDVEGLKLKQGRLLTVDQSNQVVVLDESAKKAIENPLGKTVIFN---------------KRPFRVIGVVSDQ----SLNLYSPYSTVNKITG--GSRIGSITVKISDDVNSTVAEKSLLKKDFFIMNSDTIKQTIENTTG------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	2qenA	0.088	0.742	1.311	threading_5	MLFDLEESLELRAFLNERPGILIDCRELYAERGHITREELIKELQSTISPFQ-KFQSKFKISLNLKFLTLEPRKLSLREVFRELND---------------LGEELGEFIVAFLRFYGSRGGKELLALF------------------AYAYDS-----LPNLKII----------------------------------LTGSEVGLLHDFLKITDYESPAGEVLVKDKDTSVEFLKRGFREV----NLDVPENEIEEAVELPGWLVVFGVEYLRNGDFGRAMKRTLEVAKGLIMGLEELRRRSPRYVDILRAIALGYNRWSLIRDYLAVKGTKIPEPRLYALLENLKKMNWIVEEDNTYKIADPVV-------------------------ATVLR-I
6	HHPRED-g	3ftj_A	0.158	0.491	3.181	threading_6	-------------------Q---KILENIRGIGT--------NTMTIFNGFGDR-RS------------RHIQNLKISDAN-TLSKQSYIQSVTPNTSSSGILVVGNKSFTSNLYGIGEQYFDVEGLKLKQGRLDDVDQSNQVVVLDESAKKAIENPLGKTVIFN----------K-----RPFRVIGVVSDQ----SLNLYSPYSTVNKITG--GSRIGSITVKISDDVNSTVAEKSLLKKDFFIMNSDTIK-------QTIENTTG-----------------------------------------------------------------------------------------------------------------------------------
7	PROSPECT2	2apgA	0.101	0.965	1.309	threading_7	NKPIWMAASYLVRALQQQSAAIPRIGVGEATIPSLQKVFFDFL-----GIPEREWMPQVNGAFKAIKFVNWRKSPDPSRDDHFYHLFGNVPNCDGVPLTHYWLRKREQGFQQPMEYACYPQPGALDGKLAPCLSDGTRQMSHAWHFDKRWAVERGVNRDEVVDVRLNNRGYISNLLTKEGRTLLFIDPFIDMSDYLLCDSAVVPNDDARDGVEPYLGRFGSGYVFSSHFTSRDQATADFLFRVGRNKRAPLESTGIYFIYAALYQLVKHFPDTSFDPRLSDAFNAEIVHMFDDCRDFVQAHDLRLSDAIKEKVQRYKATYYETFDYEFKNFWLNGNYYCIFAGLGMLPDRSL--------PLLQHRPESIEKAEAMFASIRREAERLRTSLPLRSLR-D
8	HHPRED-l	3is6_A	0.135	0.484	1.846	threading_8	------------------------------------------------ERDF-PHHDRICIVKTHGTRQ--DKSQVSGGVAPAIQEIPGVELATRTTLYGTS-ILEDNKTETKTLLAEPAFLD-FGVELIAGVRDSALRDN-TCLISESLARK-GDVLGKRLRPAESK-----------SDRAITIGGVFEDLNSSIQAD-LLPITW-AESLNNWGNDRYIAYVRLRPGVSPDEALLE-QKREYSLTPFNRLRPTLVN-LRIQ----------------------------------------------------------------------------------------------------------------------------------------
9	HHPRED-g	3is6_A	0.147	0.529	1.261	threading_9	-----------------------------------------------ERDF--PHHDRICIVKTHGTRQ-DKPSQVSGGVAPAIQEIPGVELATRTTLYGS-ILEDNKTYETKTLLAEPAFLD-FGVELIAGVRDSLRD-N-TCLISESLARK-GDVLGKRLRP---AES--K------SDRAITIGGVFEDLHSSIQAD-LLPITW-AESNNWG-NDRYIAYVRLRPGVSPESLDEALLE--------QKRHQD-EVFRK--AGV--------------ELHY-SLTPFNRLRL----------EDPTLVN-LRIQ----------------------------------------------------------------------------------
10	PROSPECT2	3ripA2	0.101	0.797	1.305	threading_10	ILKNQEDTFAAELHRLKQQPLFSLVDEQVVDRIRSTVAEHLWKLMVEESDLLGQLKIKDFYLLGRGELFQA-----FIDTAQHMLKTPP----------------------------TAVTEHDVNVAF------------------QQSAHKVLLDDDNLLHLTIEYHGASGWAA---------LGLSYKVQWPLHILFTPAVLEKYNVVFKY--------------LLSVRRVQAELQ------HCWALQMQRKHLKSNQTDAIKWRLRNHMAFLVD-NLQYYLQVDVLESQFSQLLHQINSTRDFESIRLAHDHFLSNLLAQSFILLKPVFHCLNEILDLCHSFCSLVSQNLLDERGAAQLSILVKGFSRQSSLLFKILSSVRNHQINSLAQLKYY

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.802 to 1txgA SCOP code=a.100.1.6	TM-score=0.416 to 1wlfA SCOP code=b.52.2.3	TM-score=0.731 to 1ialA SCOP code=a.118.1.1	TM-score=0.414 to 1wlfA SCOP code=b.52.2.3	TM-score=0.513 to 2fnaA SCOP code=a.4.5.11