Template-based Modeling Results for LNT_ECOLI


  Submitted Primary Sequence

>Length 512
MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCEEEEEEEEECCCCCCCCCHHHHEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCHHHHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEECCCCCEEEECCCCCEEEEEEEECCCCCCCHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
45121111220010000000000000000111000000000000000012221110000000000000000000000010211201000000000000000000000000001201332210000000000000000010101100000000001110112000200001000000000000001000221010000000000000002102222343332010000102023224223210220021012002312230100000221023132223200210110033311100000010323433421000000000422222221121001010011122121320021002101122221131222212121310200000001000020022004231100000011011121101111000010101321100010021000000013020002033222100102021222200002001000000000000000011133345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMAFASLIERQRIRLLLALLFGACGTLAFSPYDVWPAAIISLMGLQALTFNRRPLQSAAIGFCWGFGLFGSGINWVYVSIATFGGMPGPVNIFLVVLLAAYLSLYTGLFAGVLSRLWPKTTWLRVAIAAPALWQVTEFLRGWVLTGFPWLQFGYSQIDGPLKGLAPIMGVEAINFLLMMVSGLLALALVKRNWRPLVVAVVLFALPFPLRYIQWFTPQPEKTIQVSMVQGDIPQSLKWDEGQLLNTLKIYYNATAPLMGKSSLIIWPESAITDLEINQQPFLKALDGELRDKGSSLVTGIVDARLNKQNRYDTYNTIITLGKGAPYSYESADRYNKNHLVPFGEFVPLESILRPLAPFFDLPMSSFSRGPYIQPPLSANGIELTAAICYEIILGEQVRDNFRPDTDYLLTISNDAWFGKSIGPWQHFQMARMRALELARPLLRSTNNGITAVIGPQGEIQAMIPQFTREVLTTNVTPTTGLTPYARTGNWPLWVLTALFGFAAVLMSLRQRRK
1PROSPECT23q3eA0.0700.9431.748threading_1TMFEAAVAAKDYEKACSELLLILSQLDSNFGGIFCTRMATAITTLFSDPVLEISDLGVQRFLVYQRWLALIFASSPRKNSLEIHLDSSKSSLIKFCIVMWNISPELCASLCFALQSPRFIGTSTAF--NKRATILQWFPRHLDQLKNLNNIPSAISHDVYMHCSYDTSVNKHDVKRALNHVIRRHIESEYG----------------WKDRDVAHIGYRNNKPVMVVLLEHFHSAH-------SIYRTHSTSMIAAREHFYLIGLGSPSVLVAGDNMKQKLEFIRSVCESNGAAIFYMPSIGMDMSNTRLAPIQAIALGHPATTHSDFIEYVIVEDDYVGSEECFSETLLRLPKDALPYVPSALAPEKVDYLLRENPEVVNIGIASTTMKLNPYFLEALKAAKVKVHFHF----ALGQSNGITHPYVERFIKSYLGDSATAHPHSPNCDMMVNPFPFGVCKTGAEVHEHIDEGLFKRLGLPEWLIANTVDEYVERAVRLAEQERLELRRYKE
2PROSPECT21w36B10.0650.9281.662threading_2MSFTEAATAELRGRIRSNIHELRIACLRETTDNPLYERLLQAAQWLLLAERQMDEAAVFTIHGFCQRMLNLNAFESGMLFEQQLIEDESLLRYQACADFWRRHCYPLPREIAQVVFETWKGPQALLRDINRYLQGEAPVIKAPPPDIRDLVITRALAEIRETVAREKRRRGELGFDDMLSRLDSALRSESGEVLAAAIRFQDTDPQQYRIFRRIWHHQPETALLLIGDPAIYAFRGADIFTYMKARSE----------VHAHYTLDTNW-----RSAPGMVNSVNKLFSQTDDAFMFREIPFIPVKSKGETQPAMKMWLMEGESCGVGDYQSTM------------AQVCAAQIRDWLQAGQRGEALLMNGDDARPVRASDISVLVRSRQEAAQVRDALTLLEIPSVYLSNRDRLES----DKHLVQIVTIHKS-KGLEYPLVWLPFITNFRVQEQAFYHDRHSFEAVLD-----LNAAPESVDLAEAERLAEDLRLLYVALALGRLLQKGE
3SPARKS1erza0.1690.5083.261threading_3--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRQMILAVGQ----QGPIARAETREQVVVRLLDMLTKASRGANFIVFPELALPRWHFTDEAELRPLFEKAAELGIGFNLGYAELVV-EGGVKRRFNTSILVDKSG----KIVGKYRKIHLPGHKEYEAY-------RPFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEIICGGYNPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGMSCIVAPTGEIVALTTTLEDEVITAAVDLDRCRELREHIFN------------------FKQHRQ
4MUSTER2gglA0.1470.5040.930threading_4---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RQMILAVGQQGPIARAE----TREQVVGRLLDMLTNAASRVNFIVFPELAFPRWHFMPGPVVRPLFETAAELGIGFNLGYAELVVEGGVK-RRFNTSILVDKSG----KIVGKYRKIHLPGHKEYEAYRPF-QHLEKRY------FEPGDLGFPVYDVDAAKMGMFICNDRRWPETWRVMGLKGAEIICGGYNTPTQHDHLTSFHHLLSMQCGSYQNGAWSAAAGKVG-SCIVAPTGEIVALTTTLEDEVITAALDLDR------------------CRELREHIFNFKAHRQ
5PPA-I2plqA0.1200.5371.294threading_5-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRHGDISSSHDTVGIAVVNYKMPRLHTKEVIENAKKIADMVVGMKQGLPGMDLVVFPEYSTMGIMYDPGEETAIFAEACKKADTWGVFSLTGEKHEDHPNKAPYNTLVLINNKG----EIVQKYRKII--PWCPI------------------EGWYPGDTTYVTEGPKGLKISLIVCDDGNYPEIWRDCAMKGAELIVRCQGYMYPA----KEQQIMMAKAMAWANNTYVAVANATGFSAIIGFDGRTLGECGTEENGIQYAEVSISQIRDFRKNAQSQNHLFKLLHRGYTGLINSGEGDRG
6HHPRED-l2vhh_A0.1360.5904.006threading_6---------------------------------------------------------------------------------------------------------------------------------------------------LKNLNDCLEHLPLKEVK--------------------RILYGVEEQTLPTSAKDIAEGFDIKGYRFEQTRKRRIVRVGAIQNSIVIPTTAIEKQREAIWNKVKTMIKAAEAGCNIVCTQEAWTMPFAFANGPTTKMLAELAKAYNMVIIHSILERDM--EHGETIWNTAVVISNSG----RYLGKHRKNHIPR-------------------------MEGNTGHPVFETEFGKLAVNICYGRHHPQNWMMFGLNGAEIVFNPSA--TIGRL-SEPLWSIEARNAAIANSYFTVPINRVGSSYVAAPDGSRTPSLSRDKDGLLVVELDLNLCRQVKDFWGFRPLYAES-FK-------KASEHG-
7HHPRED-g2w1v_A0.1600.4753.425threading_7--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSTFRLALIQLQVS----SIKSDNLTRACSLVREAAK--QGANIVSLPECFNSPYGTTPGESTQKLSEVAKESSIYLIGGSIPEED--A--GKLYNTCSVFGPDGSL----LVKHRKIHLVPGKITFQ--------------ESKTLSPGDSF-STFDTPYCKVGLGICYDMRFAELAQIYAQRGCQLLVYPG---AFNLTTGPAHWELLQRARAVDNQVYVATASPAGHSTVVDPWGQVLTKAGT-EETILYSDIDLKKL-AEIRQQI-----------------PILKQKRA
8SP31erza0.1690.5082.346threading_8--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRQMILAVGQ----QGPIARAETREQVVVRLLDMLTKAASRANFIVFPELALPRWHFTDEAELRPLFEKAAELGIGFNLGYAELVV-EGGVKRRFNTSILVDKSG----KIVGKYRKIHLPGHKEYEAYR-------PFQHLEKRYFEPGDLGFPVYDVDAAKMGMFICNDRRWPEAWRVMGLRGAEIICGGYNPVPQHDHLTSFHHLLSMQAGSYQNGAWSAAAGKVGMSCIVAPTGEIVALTTTLEDEVITAAVD------------------LDRCRELREHIFNFKQHRQ
9SAM-T991f89A0.2090.4592.619threading_9-----------------------------------------------------------------------------------------------------------------------S--------------------------------------------------------------------------------------------ASKILSQ-KIKVALVQLSGSSPDKMANLQRAAT---FIERAMKEQPDTKLVVLPECFNSPYSTDQFTSVQFLSNLANKFKIILVGGTIPELDPKT--DKIYNTSIIFNED----GKLIDKHRKVHL-------------------FHE-SETLSPGEKSTTIDT-KYGKFGVGICYDMRFPELAMLSARKGAFAMIYPSA---FNTVTGPLHWHLLARSRAVDNQVYVMLCSPYGHSIVVDPRGKIVAEAGEGEEESFRQAVPLTKQR--------------------------------
10MUSTER2plqA0.1250.5310.902threading_10-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRHGDISSSHDTVGIAVVNYKMPRLH--TKAEVIENAKKIADMVVGMLPGMDLVVFPEYSTMGIMYDPGEETAIFAEACKKADTWGVFSLTGEKHEDHPNKAPYNTLVLINNKG----EIVQKYRKII--PWCPI------------------EGWYPGDTTYVTEGPKGLKISLIVCDDGNYPEIWRDCAMKGAELIVRCQG---YMYP-AKEQQIMMAKAMAWANNTYVAVANATG-SAIIGFDGRTLGECGTEENGIQYAEVSISQIRDFRKNAQSQNHLFKLLHRGYTGLINSGEGDRG

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.630 to 1f89A
SCOP code=d.160.1.1
TM-score=0.449 to 2bisA
SCOP code=c.87.1.8
TM-score=0.596 to 1w36E
SCOP code=c.37.1.19
TM-score=0.634 to 2gglA
SCOP code=d.160.1.2
TM-score=0.637 to 2gglA
SCOP code=d.160.1.2