Template-based Modeling Results for LLDP_ECOLI

Submitted Primary Sequence

>Length 551
MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAASWTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWRGIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFRFGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEWVINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPSDAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCIVGVITTLQAYVLTWMIP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAASWTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWRGIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFRFGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEWVINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPSDAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCIVGVITTLQAYVLTWMIP
CCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCHHHHHEECCCCCCCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAASWTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWRGIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFRFGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEWVINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPSDAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCIVGVITTLQAYVLTWMIP
55202211222211000000000000000000021213011000000000000000002021210000001000210120000000000012002311212002100220121210000000000000010011110100000000110113201000000001101001000001000002122021120020002000000000000000112013101300100000000000000000210012002000000000000000221222322312322223232222322222130031001000000000000021021111211100110020202102210020211123222220102000110100000000000001131312200210020022001000000000000101110010000010012112000000100000001011121001000010001003303012100000110000003100010000000001121311200110010000000000000000010122214
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNLWQQNYDPAGNIWLSSLIASLPILFFFFALIKLKLKGYVAASWTVAIALAVALLFYKMPVANALASVVYGFFYGLWPIAWIIIAAVFVYKISVKTGQFDIIRSSILSITPDQRLQMLIVGFCFGAFLEGAAGFGAPVAITAALLVGLGFKPLYAAGLCLIVNTAPVAFGAMGIPILVAGQVTGIDSFEIGQMVGRQLPFMTIIVLFWIMAIMDGWRGIKETWPAVVVAGGSFAIAQYLSSNFIGPELPDIISSLVSLLCLTLFLKRWQPVRVFRFGDLGASQVDMTLAHTGYTAGQVLRAWTPFLFLTATVTLWSIPPFKALFASGGALYEWVINIPVPYLDKLVARMPPVVSEATAYAAVFKFDWFSATGTAILFAALLSIVWLKMKPSDAISTFGSTLKELALPIYSIGMVLAFAFISNYSGLSSTLALALAHTGHAFTFFSPFLGWLGVFLTGSDTSSNALFAALQATAAQQIGVSDLLLVAANTTGGVTGKMISPQSIAIACAAVGLVGKESDLFRFTVKHSLIFTCIVGVITTLQAYVLTWMIP
1	MUSTER	1qgkA	0.123	0.971	1.018	threading_1	VNQWPELIPQLVANVTNEHMKESTLEAIGYICQDID-PEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEDTRVRVAALQNLVKIMSLYYQFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLA-QGRPVPILTQTLTKQDWNPCKAAGVCLMLLAT--CCEDDIVPHVFIKEHIKNPVMAFGCIPSQLKPLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETT-LRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFN---------DLQSLLCATLQNVLRKVQSDVVMASLLRMFQSGGVQEDALMAVSTLVEVLGGEFFKPFLGIGLKNY-AEYQVCLAAVGLVGDLCRACDEVMQLLLENLGNENVH-RSVKPQILSVFGDIALAIGGEFKEVVLNTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGLKGENVHP
2	SPARKS	2xwub	0.117	0.976	1.041	threading_2	PCAVADMVRLFQAPRCLALLELLTVLPEEFQTSRLLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVVPLQDCEALIQAAFAALQDSELFDSSVEAIVNAYVNTLLKLIPLVLGLQEQLRQAVQNGDMSHGICRIAVALGWQSFLALVNMIMFCTGTTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWS------SDEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSYSWQHTEALLAETIDVNYSDVVPGLIGLINVQLADTVMFTIGA---LSEWLADHPVMINSVLPLGNPTLKKICRECKYDLPPYAANIVAVSQDVLMKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLANPSNKLAIVHILGLLSNLFTTLDPVVVVLQQVFQLIQKVLSKWLNDAQVVEAVCAIFEKSVKTLLDFAPMVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHEPAHF--PPIEALFLLVTSVTLTLFQQGPRD--HP
3	PROSPECT2	1qgra	0.091	1.000	2.309	threading_3	MEILEKTVSPAVENLPTFLVELSRVLAQIKNSLTSKDPDIKAQYASQCVAGIACAEIPVNQWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPLTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMATQCPDTRVRVAALQNLVKYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGALQYLVPILTPCKAAGVCLMLLATCCEDDIVPHVLPFIYRDAAVMAFGCILEGPEPSQLKPLVIQELLPEAAINDVYLAPLLQCLPRVASNVCWAFSSLAEAAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVLLCATLQNVLRKVQHQDALQISDVVMASLLRMEDALMAVSTLVEVLGGEFLKYMFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGVHRSVKPQILSVFGDIALAIGGENTLQQASQAQVDKSDYDMVDYLNELRESCLEAYTGIVQGVEFILSFIDA
4	PPA-I	1b3uA	0.089	0.922	1.226	threading_4	-------AAADGDD------SLYPIAVLIDELRNED------VQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEQLGFTTLVGGLPPLESLATVEETVVRDKAVESLRAISHEHSPSD----LEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVELRQYFRNLCSDDTPAASKLGEFAKLDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVM-PTLRQAAEWRVRYMVADKFTEL------------------QKAVGPEITKTDLVPAFQNLMKAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKIIEYMPLLAGQLGVEF-FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGNYLHRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAANVRFNVAKSLQKIGPILD
5	HHPRED-l	3qe7_A	0.114	0.653	0.779	threading_5	----------------------------------RA------------------IGVSRPPLLQTIPLSLQHLF--------AMFGATVLVPVLF--H-----------IN----PATVLLFNGIGTLLYLFCKGKIP--------AYLGS-----------------SFAFISPVLLLLPL--GY-----EVALGGF-IMCGVL--FCLVSFIAGTGWLDVLFPPAAMGAIVAVIAGVAAGMAGLPDSKTIIISITTLAVTVLGSVLFRGFL---------------------------AIIPILIGVLVGYALSFA---MGIVD-TTPIINAH-WFALPT-------------LYTP-----RFEW----FAIILPAALVVIA-EHVGLVVTANIVKKDDPGLHRSMFANGLSTVISGFFGSTPNNIGVMAGGAILLSCVGKLAAAIQMIPLPVMGGVSYGVIGASGIRVLIESKVDYNQNLILTSVILIIGVSGAKVNI---------GAAEL--------------KGMALAIVGIGLSLIFKLIS-
6	HHPRED-g	3qe7_A	0.133	0.684	0.155	threading_6	-----RAIGVSERPLLQTIPLSLQHLFAMGAVLVPVLFHIATVLLFNGIGTLLYLFIGKIPA-------YLGSSFAFISP----VLLL--LP----LG-----------------YEVALGGFIMCGVLFCLVSFIFPPAAMGAIVAVIGLELAG-VAA---GMA---GLLPAEGQ--------TPDSK---------TIIISITTLAVTVLGSVLFRGFLAIIPIL-----------------------------IGVLVGYALSFAMGIV------DTTPIINAHWFALPTLYTPRFWFAILTILPAALVVIAEHVGHLVVTANIVKKD------LRDPGLHR---------------------S-MFANGLSTVISGFFGSTPNTYGENIGVMAI--TRV-----------------YSTWVIGGAAIFAIL--L-SCVGKLAAAIQMIPLPVMGGVS--LLLYGVIRVLIESKVDYNKNLI-------------LTSVILIIGVSGAKVN-I-GA-----AEKGMALATIVGIGLSL---IFKLIS-
7	SP3	2bkub	0.116	0.989	0.616	threading_7	ETQLKKLSNDNFLQFAGLSSQVLKLEGRILAALTLKN--ELVSKDSVKTQQFAQRWITQVS-PEAKNQIKTNALTALVNAAAQLIAAIADIELPHGPELMKIMVDNTGAEQPENVKRASLLALGYMCESADAL-VSSSNNILIAIVQGAQSTERLAALNALADSFIKNNMGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSIKDVVPNNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADWRNREAAVMAFGSIMDGPDKVQRTYYVHQAL--PSILNLMNDQSLQVKETTAWCIGRIADSVAESIDLPGVVQACLIGLQHPKVATNCSWTIINLVEQLAEATYPALVDGLIGAANRIFNARASAFSALTTMVEYAAETSASISTFVMDKLGQTMSVDQSLQELQSNILTVLAAVISPSSVEVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLSP
8	SAM-T99	3g61A	0.128	0.682	0.550	threading_8	---------------------------------------------------VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEDKRA-------MFAKLEEEMT-------------------------------TYAYYYTGIGAGVLIVAYIGWFDVHDVGELIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVGQKKELERYNNNLEEAKRLGIKKAITILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP------------------PETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGLTTRLANDAAQTGSRLAVIFQNIANLGT---------------------------------------------------------------GIIISLIYGWQLTLLLLAIVPIIAIAGVV-----
9	MUSTER	1b3uA	0.096	0.926	1.010	threading_9	-------AAADGDD------SLYPIAVLIDEL----------VQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYEVLLALAEQLGFTTLVGGPEYVHCLLPPLESLATVETVVRDKAVESLRAISHEHSPSDL-EAHFVPLVKRL-WFTSRTSACGLFSVCYPRVSSAVKAELRYFRNLCSDDTPMVRRAAASKLGEFAKVL---------ELDNVKSEIIPMFSNLASDSVRLLAVEACV--NIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMDKFTELQKAVGPEITKTDLVPAFQNLMK--AEVRAAASHKVKEFCLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAAIIEYMPLLAGQLGVEF-FDEKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGNYLHRMTTLFCINVL-SEVCGQDITTKHMLPTVLRMA-VANVRFNVAKSLQKIGP
10	SPARKS	2bkub	0.109	0.967	1.005	threading_10	ETQLKKLSNDNFLQFAGLSSQVLLEGRILAALTLKNE---LVSKDSVKTQQFAQRWITQVS-PEAKNQIKTNALTALVEPRIANAAAQLIAAIADIHGAWPELMKIMVDNTGAEENVKRASLLALGYMCESADALVSSNNILIAIVQGAQSTEVRLAALNALADSLI------------FIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSSMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHLEPVLEFVEQNAAVMAFGSIMDGPDKVQRTYYVHQALPSILN--LMNDQSLQVKETTAWCIGRIADSVAESIDLPGVVQACLIGLQDPKVATNCSWTIINLVEQLAEATLVDGLIGAANRIDNEFNARASAFSALTTMVEYAAETSASISTFVMDKLGQTMSVDQSLQELQSNILTVLAAVISPSSVPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLSP

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.722 to 1qgkA SCOP code=a.118.1.1	TM-score=0.552 to 2q6hA SCOP code=f.54.1.1	TM-score=0.561 to 1m8xA SCOP code=a.118.1.8	TM-score=0.701 to 1qgkA SCOP code=a.118.1.1	TM-score=0.857 to 1b3uA SCOP code=a.118.1.2