Template-based Modeling Results for LIVM_ECOLI


  Submitted Primary Sequence

>Length 425
MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Download Primary Sequence

  Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA
CCCHHHHHHHHHHHHHHHHHHHHHEEEEEECCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Download Predicted 3-state Secondary Structure Types

  Predicted Solvent Accessibility

>0-buried to 9-exposed
MKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA
54423002000000000000001000001032010102101211000000000000001002200341132132232211223221121100000000000001011120000000000000000000000000000000000001000000000012112111100000001001000001000012131100000000000001000121130010220022012121111312321331012100111013122222100000000000000000001022011010020022122003100110210100000000000000000000210100131010110010000000001111000000000010032002102100000000000000001030012102200313322242444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420
Download Predicted Solvent Accessibility

  Top 10 Templates

RankMethodTemplateIdentityCoverageN-ZscoreThreading AlignmentMKPMHIAMALLSAAMFFVLAGVFMGVQLELDGTKLVVDTASDVRWQWVFIGTAVVFFFQLLRPAFQKGLKSVSGPKFILPAIDGSTVKQKLFLVALLVLAVAWPFMVSRGTVDIATLTMIYIILGLGLNVVVGLSGLLVLGYGGFYAIGAYTFALLNHYYGLGFWTCLPIAGLMAAAAGFLLGFPVLRLRGDYLAIVTLGFGEIVRILLLNNTEITGGPNGISQIPKPTLFGLEFSRTAREGGWDTFSNFFGLKYDPSDRVIFLYLVALLLVVLSLFVINRLLRMPLGRAWEALREDEIACRSLGLSPRRIKLTAFTISAAFAGFAGTLFAARQGFVSPESFTFAESAFVLAIVVLGGMGSQFAVILAAILLVVSRELMRDFNEYSMLMLGGLMVLMMIWRPQGLLPMTRPQLKLKNGAAKGEQA
1PROSPECT21jdha0.0910.9081.862threading_1DEDQVVVNKAAVMVHQLS--------------------KKEASRHAIMRSPQMVSAIVRTMQN-------------------TNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMREKLLWTTSRVLKVLSVCSSNAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALRAGDREDITEPAICALRAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTMEEIVEGCTGALHILARDLAQDKEAAEAIEAEGASRNES
2PPA-I1kpkA0.1110.9131.066threading_2PLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGGALEDQRPVRWWRVLPVKFFGGLGTLGGGMVLGREGPTVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFNAPLAGITLISIKAVFIGVIMSTIMYRIFNHEVALIDVGKILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAFVAPATSGGGFNLIPIATAGNFS------MGMLVFIFVARVITTLLCFSSGAPGG----------------------IFAPMLALGTVLGTAFGMVAVELFPQYHLE---------AGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQLILPMIITGLGATLLAQFTGGKPLYSAILARTLAKQEAEQL
3SP32nq2a0.1400.6891.001threading_3--------------------------------------------YPKILFGLTLLLVITAVIS--------LGIGRYSLSVPQIDPVQQQVIF--------------QVRLPRILTALCVGAGLALSGVVLQGIFRLVNIG----VTSGSAFGGTLAIFFGFS-LYGLFTSTILFGFGTLALVFLFSFKSLLMLILIGMILSGLFSALVSLLQYISDTEEKLPSI-VFWLMG-SFA------TSN----------------WEKLLFFFVPFLLCSSILLSL-----SWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGS-IGWVG---L-----IIPHLSRMLVGANHPCTMLVGATYMLLVDNVARSLSSILTALIGAPLFGVLVYKL-----------------------
4PROSPECT23a6pA10.0990.8991.759threading_4AMDQV--NALCEQLVKAVTVMM---------------DPNSTQRCVPCGLRLVRHFGLQILEHVVKFRWNGMS---------RLEKVYLKNSVMELIANGTLNILEEENHIKDALSRIVVEMIKREMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKAQANCRVGVAALNTLAG------------YIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVLEDRKPLMVLFGDVAMHYILSAAQTAD-----GGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALFPLLLAIIPKYLRASMTNLSCEYSRFDFDSLDPKTSFQMAGEWLKYQLSTF
5PPA-I2nq2A0.1510.6561.062threading_5-------------------------------------------------------------------------------------YPKILFGLTLLLVITAVISLGIGRQQQVIFQVRLPRILTALCVGAGLALSGVVLQGIFRNVTSGSAFGGTLAIFFGFS-LYGLFTSTILFGFGTLALVFLFSFKSLLMLILIGMILSGLFSALVSLLQYISDTEEKLPSI--------------------VFWLMGSFATSNWEKLLFFFVPFLLCSSILLSLSWRLNLLSLD---------EKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGS-IGWVG-------LIIPHLSRMLVGANHQSCTMLVGATYMLLVDNVARSLISILTALIGAPLFGVLVYKL-----------------------
6PROSPECT21xm9A0.0800.8781.739threading_6SQDEKYQAIGAYYIQHTC--------------------FQDESAKQQVYQLGGICKLVDLLR--------------------SPNQNVQQAAAGALRNLVNKLETRRQNGIREAVSLLIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAA---------SRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAG---ALQNLTASKGLMSSGMSQLIGLSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSMLNNIINLCRSSASPKAAEAARLLLSDMWSSKEL
7PROSPECT21ejlI0.1220.8521.680threading_7SNNLESQLQATQAARKLLS-------------------REKQPPIDNIIRAGLIPKFVSFL-------------------GKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVEVLADSCWAISYLTDGPNER------------IEMVVKKGVVPQLVKLLGATE-------------LPIVTPALRAIGNIVTGTDEQTQKVIDAGAVFPSLLTNPKTNIQKEATWTQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSADTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEAS
8PROSPECT21b3ua0.0890.9791.634threading_8LGVERTRSELLPFLTVLLALAEQLG--------TFTTLVGGPEYVHCLLPPLESLAVRDKAVESLRAISHEHSPSDLEAHFVPAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRVRRAAASKLGEFAKVLELDNVKSEIIPMFAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAVRLAIIEYMPLLAGQLGVEFFD-EKLNSLCMAWLVDHVYAIREAATSNLTLFCINVLSEVCGQDITTKHMLPTVLRMAGDPVDNSTLQSEVKPILEKLTQDQDA
9MUSTER1kpkA0.1480.8890.872threading_9LRRRQLIRQLLERDKTPLAILFMAAV-------------------VGTLVGLAAVAFDKGVAWLQNQRMGALVH------TADNYPLLLTVAFLCSAVLAMFGYFLVRKYIPEIEGRVLPVKFFGGLGTLGGGMVG----REGPTVQIGGNIGRMVLDIFRLKEARHTLLATGAAAGLAAAFNAPLAGIRYTLISIKAVFIGVIMSTIMYRI----NHEVALIDVGKLSDAPLNTLWLYLILGVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGIPIATANFSMGMLVFIFV--TLLCFSSGA-PGGIFAPMLALGTVLGTAFGMVAVELFP---------QYHLEAGTFAIAG-MGALLAASIRA-PLTGIILVLEMTDNYQLILPMIITGLGATLLAQGGKPLYSAILARTLAKQEAEQL
10SPARKS2xwub0.1170.9410.889threading_10DIPTDQYESLKAQLFTQITRF-----------------ASGSKIVLTRLCVALASLALSAVADMVRLFQAPVDGQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWV-QLEVPLQDCEALIQAAFAALFDSSVEAIVNAISQPDAQVNTLLKLIPLVLGLQEQLRQAVQNGD--METSHGICRIAVALGENHRALLDQVEHWQSFLATGIPGHYPVNETTSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFRIYRVDISDTMYVYEMLGLSNLYDKLGRLLTSYSWQHTEALLYGFQSETIDVNYSDVVPGLIGLIP-----RISISNVQLADTVMFTIGALSEWLADHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECKYDLP

  Predicted Tertiary Structure

Download Model 1 Download Model 2 Download Model 3 Download Model 4 Download Model 5
TM-score=0.544 to 2q6hA
SCOP code=f.54.1.1
TM-score=0.667 to 1wa5B
SCOP code=a.118.1.1
TM-score=0.857 to 1kpkA
SCOP code=f.20.1.1
TM-score=0.689 to 1l7vA
SCOP code=f.22.1.1
TM-score=0.861 to 1kpkA
SCOP code=f.20.1.1