Template-based Modeling Results for LIVH_ECOLI

Submitted Primary Sequence

>Length 308
MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLSTEYKDVVSFALLILVLLVMPTGILGRPEVEKV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLSTEYKDVVSFALLILVLLVMPTGILGRPEVEKV
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHEECCCCCEECCCCCCCCCCCCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLSTEYKDVVSFALLILVLLVMPTGILGRPEVEKV
44310210011001000000000000000000000010000000100000000000001001111122010100000000000010001001200011024232010000000000001100100112321101211213111121311101000110000000000000000003103002001001211300210002032010000000000010000000111101111101100020000000000010000000000000021001110122011000000000000010211213221234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSEQFLYFLQQMFNGVTLGSTYALIAIGYTMVYGIIGMINFAHGEVYMIGSYVSFMIIAALMMMGIDTGWLLVAAGFVGAIVIASAYGWSIERVAYRPVRNSKRLIALISAIGMSIFLQNYVSLTEGSRDVALPSLFNGQWVVGHSENFSASITTMQAVIWIVTFLAMLALTIFIRYSRMGRACRACAEDLKMASLLGINTDRVIALTFVIGAAMAAVAGVLLGQFYGVINPYIGFMAGMKAFTAAVLGGIGSIPGAMIGGLILGIAEALSSAYLSTEYKDVVSFALLILVLLVMPTGILGRPEVEKV
1	MUSTER	2nq2A	0.149	0.847	0.855	threading_1	QQVIFQVRLPRILTALCVGAGLALSGVVLQGIFR-----NLVNPHIVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFSF--------------SLLMLILIGMILSGLFSALVSLLQSDTEEKLPSIV--FWLMGSFAT----SNWEKLLFFFVPFLLCSSILLSLSW-----RLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISG--------SIGWVGLIIPHLSRMLVGANHPCTMLVGATYMLLVDNVARSLSDAEIISILTALIGAPLFGV----LV-----YKL
2	SPARKS	2nq2a	0.145	0.828	1.005	threading_2	IDPVQQQVIFRLPRILTALCVGAGLALSGVVLQGIFRII----G--VTSGSAFGGTLAIFFGFS-------------LYGLFTSTILFGFGTLALVFLFSFKSLLMLILIGMILSGLFSALVSLLISDTEEKLPSIV--FWLMGSFAT----SNWEKLLFFFVPFLLCSSILLSLSW-----RLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAIS----GSIG-WVGIPHLSRML-------VGAPCTMLVGATYMLLVDNVARSLSDAEISILTALGAPLFGVLVY-KL----------
3	PROSPECT2	3a6pA1	0.077	0.974	1.504	threading_3	AMDQVNALCEQLVKAVALSRIVVEMIKREDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVKPLMVLFGDVAMHYILSAAQTAD-----GGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFLAFTTHPSQF---LRSSTQMTWGALFRHSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSC
4	PPA-I	2nq2A1	0.152	0.682	1.559	threading_4	---------------------------------------------------------------------YPKILFGLTLLLVITAVISLGIGRYSLSVPQIDPVQQQVIFQVRLPRILTALCVGALALSGVVLQGIFRNPLVMGSFATS----NWEKLLFFFVPFLLCSSILLSLSW-----RLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISG--------SIGWVGLIIPHLSRMLVGANHPCTMLVGATYMLLVDNVARSLIPISILTALIGAPLFGVLVYKL------------
5	HHPRED-l	2nq2_A	0.136	0.834	1.558	threading_5	-DVQQQVIFQRILTALCVGAGLALSGVVLQGIFRNPHIIGVTSGSAFGGTLAI--F----FGFS---LYG-LFTSTILFGF----GTLALVFLFSFK-----SLLMLILIGMILSGLFSALVSLLQYISDEEKLPS-IVFWLMGS----FATSNWEKLLFFFVPFLLCSSILLSLS-----WRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVA----ISGSI---GWVGLIIPHLSRMLVG--ANHQSLLPCTMLVGLLVDNVAREIPISILTALIGAPLFGVLVYKL------------
6	HHPRED-g	2nq2_A	0.160	0.834	1.243	threading_6	VPQVQQQVIFRILTALCVGAGLALSG--V--VLQGIFRNPLVNPHIIGVTSGSAFTLAIFFG--F-S-LYGL----FTSTILFGFGTLALVFLFSFK----SL-LMLILIGMILSGLFSALVSLLQYIDEEKLPSI--VFWLMGSF----ATSNWEKLLFFFVPFLLCSSILLSL-----SWRLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAISGSI-G----WVGLI--IPHLSRMLVG--ANHQSLLPCTMLVGATYMLLVDNVAIILTALIGA-PLFGVLVYK-------------
7	SP3	2nq2a	0.158	0.860	0.854	threading_7	DPVQQQVIFQRLPRILTALCVGAGLALSGVVLQGIFR--NLV--NPHIIGVTSGSAFGGTLAIFFGFSLYGLFTSTILFGFGTLALVFLFS---------FKSLLMLILIGMILSGLFSALVSLLISDTEEKLPSIV--FWLMGSFAT----SNWEKLLFFFVPFLLCSSILLSLSW-----RLNLLSLDEKEAKALGVKMAPLRWLVIFLSGSLVACQVAIS----GSIG-WVGL---IIPHLSRMLVGANHPCTMLVGATYMLLVDNVARSLSDAEISILTALGAPLFGVLVY-----------KL
8	SAM-T99	3h2zA2	0.128	0.432	0.732	threading_8	------AFVERKLFTLNTGH---------------------------AITAYLGKLAGHQTI--------RDAIIQKILGRFENPYLKDDVERVGRQPLRKLRLIKPLLGTLEYSLPHKNLIQGIAGAHFRSEDDPQAQ----------------------------------------------------------------------ELAALIADKGPQAALAQISGLDANSE------------------------------VVSEAVTAY----------------------------------
9	MUSTER	3g61A1	0.085	0.951	0.808	threading_9	GWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRI-------GQVLTVFFSVLIGAFSVGQASPNIEAFANARGAA--YEVFKIIDNKPSQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTYAQSLQIPYRNAMKKAHVFGIT-FSFTQAMMYFSYAACFRF---GLVTQQLMT--
10	SPARKS	3o5ta	0.132	0.864	0.827	threading_10	-DHSIRSRALGAYLGLACGDALGATKGEIAHQYGVHKHIKLPAGQVTDDTEMSIHLGRAILAAPEWDA--------------------RRAAEEFAVWLKGVPVDVGDTTRRGIRRFIMHGTLSEPESEYHAGNGAAMRNLPVALATLGDDAAFERWTVEQAMSDAATLTLGHMVRRLVLGGDVRDVR--DESNKLIAKHRQFKFQPYRGLATAIVDTMQTVMHYYFQTDSVESCVVETVN------QGGTGAIAGMLAGATY-GVEPRWLRKLDRDVYNEICAQVDGLL--ARAPQG----------

Predicted Tertiary Structure


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TM-score=0.712 to 1l7vA SCOP code=f.22.1.1	TM-score=0.408 to 1l7vA SCOP code=f.22.1.1	TM-score=0.671 to 1l7vA SCOP code=f.22.1.1	TM-score=0.615 to 1wa5B SCOP code=a.118.1.1	TM-score=0.615 to 1l7vA SCOP code=f.22.1.1