Template-based Modeling Results for LIPA_ECOLI

Submitted Primary Sequence

>Length 321
MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHEECCCCCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHCCCHHHEEECCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHCCCHHHHHHHHHHCCCCEECCCCCCCHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCCCEEECCCHHHHHHHHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK
553322234223243233112031322223432224203101021223223020012003521012002302010011002210000001121012302103123232221223101200200121222000000012222532103100100200243133020100011131313200200120111000110210220143022202132003002202412231212000000012113201200210251101000012102113320201110122102101100331112100000001001202220312334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKPIVMERGVKYRDADKMALIPVKNVATEREALLRKPEWMKIKLPADSTRIQGIKAAMRKNGLHSVCEEASCPNLAECFNHGTATFMILGAICTRRCPFCDVAHGRPVAPDANEPVKLAQTIADMALRYVVITSVDRDDLRDGGAQHFADCITAIREKSPQIKIETLVPDFRGRMDRALDILTATPPDVFNHNLENVPRIYRQVRPGADYNWSLKLLERFKEAHPEIPTKSGLMVGLGETNEEIIEVMRDLRRHGVTMLTLGQYLQPSRHHLPVQRYVSPDEFDEMKAEALAMGFTHAACGPFVRSSYHADLQAKGMEVK
1	MUSTER	1r30B	0.150	0.829	0.961	threading_1	------------------------------HRPRWTLSQVTEL-KPL-LDLLFEAQQVHRQH---------FDPRQVQ-----STLLSIKTGACPEDCKYCPQSRYKTGLMEVEQVLESARKAKAAGSTRFCMGAAWKN-PHERDMPYLEQMVQGVKAMGLEACMTLGTLS-----ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDA--GIKVCSGGIVGLGETVKDRAGLLLQLANLPPESVPINMLVKPLADNDDVDRIMMPTSYEQTQAMCFMAGANSIFYGLLTTPNPEEDKDLQLFR-K
2	SPARKS	1r30a	0.157	0.832	2.533	threading_2	------------------------RPRWTLSQELFEKP---------LLDLLFEAQQVHRQH---------FDPRQ----VQVSTLLSIKTGACPEDCKYCPQSSRAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLEACMTLGTLS-----ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAG--IKVCSGGIVGLGETVKDRAGLLLQLANLPPESVPINMLVKPLADNDDVDRIMMPTSYEQTQAMCFMAGANSIFYGLLTTPNPEEDKDLQLFRKL
3	PROSPECT2	1r30A	0.152	0.838	3.029	threading_3	------------------------------------RPRW----TLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQV----STLLSIKTGACPEDCKYCPQSSRYKTGMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLEACMTLGTLS-----ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAG--IKVCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMMPTSYVRLSAGREQMNEQTQAMQQT
4	PPA-I	1r30B	0.133	0.841	1.404	threading_4	------------------------------HRPRWTLSQVTELFEKPLLDLLFEAQQVHRQH---------FDPRQ----VQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEVEQVLESARKAKAAGSTRFCMGAAWKN-PHERDMPYLEQMVQGVKAMGLEACMTLGT-----LSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAG--IKVCSGGIVGLGETVKDRAGLLLQLANLPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAVARIMTSYVRLSAGREQMNEQTQAMCFMAGAN
5	HHPRED-l	2qgq_A	0.137	0.660	4.322	threading_5	--------------------------------------------------------------------------------EERPYAYVKISDGC-------------GSLRSRSIITREVEDLLKEGKKEIILVAQDTTSYGIDLKQALPDLLRRLNSLNGEFWIRV-YLHPDHLTEEIISA-LELDVKYFDVPVQHSDKILKL-GRTKSSEELKK-LSSIRERFPDAVLRTSIIVGFGETEEDFEELKQFVEEIQFDKLGAFVYSD----------KVDPE-AEELLLLQAEISNRFVGEGKVGRTWTEAPEFVRGLEV-
6	HHPRED-g	1r30_A	0.157	0.813	2.894	threading_6	------------------RPR----WTLSQVTELFEKP--------L-LDLLFEAQQVHRQH-----------------FDPRQVLLSIKTGACPEDCKYCPQSRYKAERMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLEACMTLGTLS-----ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDA--GIKVCSGGIVGLGETVKDRAGLLLQLANLPTESVPINMLVKVKGTPLADNDDVDAFDFI--RTIAVAIMMPTRLSAG--REQMNEQTQAMCAGAN
7	SP3	1r30a	0.150	0.832	2.439	threading_7	------------------------------------RPRWTLSQV----TELFELLDLLFE--AQQVHRQHFDPRQVQV----STLLSIKTGACPEDCKYCPQSSRAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNP-HERDMPYLEQMVQGVKAMGLEACMTLGTLS-----ESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRD--AGIKVCSGGIVGLGETVKDRAGLLLQLANTPPESVPINMLVKPLADNDDVDRIMMPTSYEQTQAMCFMAGANSIFYGLLTTPNPEEDKDLQLFRKL
8	SAM-T99	3iixA	0.175	0.835	1.523	threading_8	TGREILEKLERREFTREVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF--------------------------------SNVCRKNCLYCGLRRDNRYRMTPEEIVERARLAVQFGAKTIVLQSGEDPYMPD--------VISDIVKEIKKMGVAVTLSLGEWPRE-YYEKWKEAGADRYLLRHETAPVLHRKLRPDTSFENRLNLL-TLKEL--GYETGAGSMVGLGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPD---------TPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAMGTIVPG
9	MUSTER	3t7vA	0.150	0.850	0.779	threading_9	----------------------------SLGDKVIEGYQL-------TDNDLRTLLSLESKEGLERLYSAAR---VRDHYGNRVFLNCFIT-YCKNQCSFCYYNCRNEYRLTMEEIKETCKTLKGAGFHMVDLTMGEDP-YYYEDPNRFVELVQIVKEELGPIMISP------GLMNATLLKAREKGANFLALYQETYTELYRKLRVGQSFDGRVNARRFAKQQG--YCVEDGILTGVGNDIESTILSLRGMSTNDPDMVRVMTFLPPLEGFRDKSRLMFPKEGIDGMVLRLNAGANIVTSIPSQLEGVAIKSVVRRLEIM
10	SPARKS	3ciwa	0.139	0.854	2.428	threading_10	----------------------------MTGREILEKLE----RREFTREVLKEALSINDRGFNEALFKLAD--EIRRKYVGDERAIIEFSNVCRKNCLYCGLRRDNKNRMTPEEIVERARLAVQFGAKTIVLQSGEDPYMP----DVISDIVKEIKKMGVAVTLSLGEWP-----REYYEKWKEAGADRYLLRHETAPVLHRKLRPDTSFENRLNLLTLKE---LGYETGAGSMVGLGQTIDDLVDDLLFLKEHDFDMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILPDSNIPATT-AMGTIVPGGREITLRCG

Predicted Tertiary Structure


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TM-score=0.792 to 1r30B SCOP code=c.1.28.1	TM-score=0.792 to 1r30B SCOP code=c.1.28.1	TM-score=0.794 to 1r30B SCOP code=c.1.28.1	TM-score=0.778 to 1r30B SCOP code=c.1.28.1	TM-score=0.805 to 1r30B SCOP code=c.1.28.1