Template-based Modeling Results for LIGB_ECOLI

Submitted Primary Sequence

>Length 560
MKVWMAILIGILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFEP
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKVWMAILIGILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFEP
CCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEECCCCCCCHHHHCCHHHHHHHHHHHHCEEEEEECCEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHCCCHHHCCCCCCCCEEEEEEEEEHHHHHHHHCCCCCHHHHHHHHHHCCCHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEECCCHHHHHHHHHHHCCCCCCCCCCEEEEEECCHHHHCCCCCCCCCEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEEEECCEEEEEEECCCHHHHHHCCCCCCCEEEEEECCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHCCCHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCHHHHHHHHHHCCCHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKVWMAILIGILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFEP
54101000000000001021102211222023102301310230021012212130311101200310140142112333322232231212021110003201223101200231220002020200000000221200200011212412200210220220121022312202000110011301132222221020200010232232101310000000012123112110200130112113211200420310120122123231211010000200321222321121010000020422110010110101112202000000011010221101101001132023220120010000102410020110024233324320131423110000213202310121011001230100300031002101323213201000202231123120112110120021023124120120001010110300101221320220120233003403100210021012122222023002102424122224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKVWMAILIGILCWQSSVWAVCPAWSPARAQEEISRLQQQIKQWDDDYWKEGKSEVEDGVYDQLSARLTQWQRCFGSEPRDVMMPPLNGAVMHPVAHTGVRKMVDKNALSLWMRERSDLWVQPKVDGVAVTLVYRDGKLNKAISRGNGLKGEDWTQKVSLISAVPQTVSGPLANSTLQGEIFLQREGHIQQQMGGINARAKVAGLMMRQDDSDTLNSLGVFVWAWPDGPQLMSDRLKELATAGFTLTQTYTRAVKNADEVARVRNEWWKAELPFVTDGVVVRAAKEPESRHWLPGQAEWLVAWKYQPVAQVAEVKAIQFAVGKSGKISVVASLAPVMLDDKKVQRVNIGSVRRWQEWDIAPGDQILVSLAGQGIPRIDDVVWRGAERTKPTPPENRFNSLTCYFASDVCQEQFISRLVWLGAKQVLGLDGIGEAGWRALHQTHRFEHIFSWLLLTPEQLQNTPGIAKSKSAQLWHQFNLARKQPFTRWVMAMGIPLTRAALNASDERSWSQLLFSTEQFWQQLPGTGSGRARQVIEWKENAQIKKLGSWLAAQQITGFEP
1	MUSTER	1v9pA	0.221	0.955	3.599	threading_1	------------------------MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPSPTEQVGARPLERPVRHPTRMYSLDNAFTYEEVLAFEERLERYTVEHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLKGVPDRLEVRGEVYMPIEAFLRLNEEFKNPRNAAAGSLRQKDPRVTAKRLRATFYALGLGLKSQYELLLWLKEKGFPVEHG-YEKALGAEGVEEVYRRFLAHALPFEADGVVVKLDDLWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVLRVLKERRTGEPETCPECGHRLKVHRCPNPLCPAKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPEVLARNLARRFGTMDRLLEASLEELLEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVSMESK
2	SPARKS	1dgsa	0.212	0.950	10.347	threading_2	------------------------MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPSPTEQVGARPLERPVRHPTRMYSLDNAFTYEEVLAFEERLERYTVEHKVDG-LSVLYYEEG--VWSTGSGDGEVGEEVTQNLLTIPTIPRRLKGVPDRLEVRGEVYMPIEAFLRLNEVFKNPRNAAAGSLRQKDPRVTAKRLRATFYALGLGLKSQYELLLWLKEKGFPVEHC-YEKALGAEGVEEVYRRGLRHALPFEADGVVLKLDDLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVLRVLKERRTGWPEACPECGHEGKVHRCPNPLCPAKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVSMESK
3	PROSPECT2	2owoA	0.227	0.952	6.682	threading_3	M--------------------------ESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPSPTQRVGAAPLAAQIRHEVPMLSLDNVFDEESFLAFNKRVQTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGEPARLEVRGEVFLPQAGFEKINKVFANPRNAAAGSLRQLDPRITAKRLTFFCYGVGELPDTHLGRLLQFKKWGLPVSDRV-TLCESAEEVLAFYHKVDRPTLGFDIDGVVIKVNAQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLRPEDTREVVFPTVEGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAP
4	PPA-I	2owoA	0.225	0.952	7.585	threading_4	--------------------------MESIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPSPTQRVGAAPLAAQIRHEVPMLSLDNVFDEESFLAFNKRVQDWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGEPARLEVRGEVFLPQAGFEKINEVFANPRNAAAGSLRQLDPRITAKRLTFFCYGVGELPDTHLGRLLQFKKWGLPVSDRV-TLCESAEEVLAFYHKVERPTLGFDIDGVVIKVNSQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEFPTHCPVCGGEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAP
5	HHPRED-l	2owo_A	0.224	0.950	2.042	threading_5	------------------------ME--SIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPSPTQRVGAAPLASQIRHEVPMLSLDNVFDEESFLAFNKRVVTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGIPARLEVRGEVFLPQAGFEKINEVFANPRNAAAGSLRQLDPRITAKRLTFFCYGVGEGPDTHLGRLLQFKKWGLPVSDR-VTLCESAEEVLAFYHKVDRPTLGFDIDGVVIKVNSLAEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSEEDVFPTHCPVCGSDEAVARCTGGICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPA-
6	HHPRED-g	2owo_A	0.223	0.952	2.368	threading_6	------------------------MES--IEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPSPTQRVGAAPLAAFIRHEVPMLSLDNVFDEESFLAFNKRVQTWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGIPARLEVRGEVFLPQAGFEKINEVFANPRNAAAGSLRQLDPRITAKRLTFFCYGVGELPDTHLGRLLQFKKWGLPVSDR-VTLCESAEEVLAFYHKVDRPTLGFDIDGVVIKVNSLQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEFPTHCPVCGSEAVARCTGGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREVGAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAP
7	SP3	1dgsa	0.212	0.950	10.314	threading_7	------------------------MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPSPTEQVGARPLERPVRHPTRMYSLDNAFTYEEVLAFEERLERYTVEHKVDG-LSVLYYEEG--VWSTGSGDGEVGEEVTQNLLTIPTIPRRLKGVPDRLEVRGEVYMPIEAFLRLNEVFKNPRNAAAGSLRQKDPRVTAKRLRATFYALGLGLKSQYELLLWLKEKGFPVEHC-YEKALGAEGVEEVYRRGLRHALPFEADGVVLKLDDLWGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVLRVLKERRTGWPEACPECGHEGKVHRCPNPLCPAKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPEVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVSMESK
8	SAM-T99	1v9pA	0.214	0.952	6.223	threading_8	------------------------MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPSPTEQVGARPLFRPVRHPTRMYSLDNAFTYEEVLAFEERLERYTVEHKVDGLSVNLYYEEGVLVFGATRGDGEVGEEVTQNLLTIPTIPRRLKGVPDRLEVRGEVYMPIEAFLRLNEVFKNPRNAAAGSLRQKDPR-VTAKRGLRATFYALGLKSQYELLLWLKEKGFPVEH-GYEKALGAEGVEEVYRRFQRHALPFEADGVVVKLDDLWRELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVLRVLKERRTGEE-RPIRWPETCPECGCPNPLCPAKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVGERNLARRFGTMDRLLEASLEELLEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVSMESK
9	MUSTER	2owoA	0.225	0.952	3.578	threading_9	------------------------ME--SIEQQLTELRTTLRHHEYLYHVMDAPEIPDAEYDRLMRELRELETKHPSPTQRVGAAPLAAQIRHEVPMLSLDNVFDEESFLAFNKRVQDWCCELKLDGLAVSILYENGVLVSAATRGDGTTGEDITSNVRTIRAIPLKLHGIPARLEVRGEVFLPQAGFEKINEVFANPRNAAAGSLRQLDPRITAKRLTFFCYGVGELPDTHLGRLLQFKKWGLPVSDRV-TLCESAEEVLAFYHKVEEDTLGFDIDGVVIKVNSQQEQLGFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHNADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPVFPTHCPVCGSDEAVARCTGLICGAQRKESLKHFVSRRAMDVDGMGDKIIDQLVEKEYVHTPADLFKLTAGKLTGLERMGPKSAQNVVNALEKAKETTFARFLYALGIREATAAGLAAYFGTLEALEAASIEELQKVPDVGIVVASHVHNFFAEESNRNVISELLAEGVHWPAP
10	SPARKS	1dgtb	0.212	0.950	10.231	threading_10	------------------------MTREEARRRINELRDLIRYHNYRYYVLADPEISDAEYDRLLRELKELEERFPSPTEQVGARPLERPVRHPTRMYSLDNAFTYEEVLAFEERLERYTVEHKVDG-LSVLYYEEGVWSTG--SGDGEVGEEVTQNLLTIPTIPRRLKGVPDRLEVRGEVYMPIEAFLRLNEVFKNPRNAAAGSLRQKDPRVTAKRLRATFYALGLGLKSQYELLLWLKEKGFPVEHC-YEKALGAEGVEEVYRRGLRHALPFEADGVVLKLDDLTGELGYTARAPRFALAYKFPAEEKETRLLDVVFQVGRTGRVTPVGVLEPVFIEGSEVSRVTLHNESYIEELDIRIGDWVLVHKAGGVIPEVLRVLKERRTGWPEACPECGHEGKVHRCPNPLCPAKRFEAIRHYASRKAMDIEGLGEKLIERLLEKGLVRDVADLYHLRKEDLLGLERMGEKSAQNLLRQIEESKHRGLERLLYALGLPGVLARNLARRFGTMDRLLEASLEELIEVEEVGELTARAILETLKDPAFRDLVRRLKEAGVSMESK

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.762 to 1v9pA SCOP code=a.60.2.2	TM-score=0.607 to 1v9pA SCOP code=a.60.2.2	TM-score=0.845 to 1v9pA SCOP code=a.60.2.2	TM-score=0.607 to 1v9pA SCOP code=a.60.2.2	TM-score=0.609 to 1v9pA SCOP code=a.60.2.2