Template-based Modeling Results for LHGO_ECOLI

Submitted Primary Sequence

>Length 422
MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRAARSVDALHAAFNQ
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRAARSVDALHAAFNQ
CCEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEECCEEEEECCHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHCCCCCCCCEEECCCCEEECHHHHHHHHHHHHHHCCCEEEECCEEEEEEEECCEEEEEECCCCEEEECEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCCCCEECCCCCCCCCCEEEEEEECCCEEEECCCEEECCCCCCCCCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCEECCCCCCCEEECCCCCCCCCEEEECCCCEEEEECCCCHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCCCCHHHHHHCC
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRAARSVDALHAAFNQ
31000000000000000010022233120000113211123211100000100112221211010011002003200321202011001000001321032021003201312121100113003332120212000001210100021001000210232202001102011022233101011243120201000000000002003102132212000010100102333332132101101232131100000211211000001001023332243221202100210112111200120022001201220022001210241023022220111000020101133231130000121320000010302100001100110011022113233232222222322221112134
12345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MYDFVIIGGGIIGMSTAMQLIDVYPDARIALLEKESAPACHQTGHNSGVIHAGVYYTPGSLKAQFCLAGNRATKAFCDQNGIRYDNCGKMLVATSDLEMERMRALWERTAANGIEREWLNADELREREPNITGLGGIFVPSSGIVSYRDVTAAMAKIFQSRGGEIIYNAEVSGLNEHKNGVVIRTRQGGEYEASTLISCSGLMADRLVKMLGLEPGFIICPFRGEYFRLAPEHNQIVNHLIYPIPDPAMPFLGVHLTRMIDGSVTVGPNAVLAFKREGYRKRDFSFSDTLEILGSSGIRRVLQNHLRSGLGEMKNSLCKSGYLRLVQKYCPRLSLSDLQPWPAGVRAQAVSPDGKLIDDFLFVTTPRTIHTCNAPSPAATSAIPIGAHIVSKVQTLLASQSNPGRTLRAARSVDALHAAFNQ
1	MUSTER	3dmeA	0.269	0.836	2.542	threading_1	DIDCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGATLSCRVLINAAGLHAPGLARRIEGIPRDSIPPCKGSYFTLAGRA--PFSRLIYPVP--QHAGLGVHLTLDLGGQAKFGPDTEWI-ATEDYTLDPRRA---------------------------------DVFYAAVRSYWPALPDGALAPGYTGIRPKISGPH-EPAADFAIAGVAGLVNLYGIESPGLTASLAIAEETLARLA----------------------------
2	SPARKS	3dmea	0.266	0.836	4.291	threading_2	DIDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPCKGSYFTLAGRAP--FSRLIYPVPQH--AGLGVHLTLDLGGQAKFGPDTEWI-ATEDYTL---------------------------------DPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGP-HEPAADFAIAGVAGLVNLYGIESPGLTASLAIAEETLARLA----------------------------
3	PROSPECT2	3dmeA	0.258	0.836	4.501	threading_3	TIDCIVIGAGVVGLAIARALAA--GGHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGATLSCRVLINAAGLHAPGLARRIEGIPIPPEYLCKGSYFTLAGRAP--FSRLIYPVPQH--AGLGVHLTLDLGGQAKFGPDTEWI----ATEDYTLDPRRA------------------------------DVFYAAVRSYWPALPDGALAPGYTGIRPK-ISGPHEPAADFAIAGVAGLVNLYGIESPGLTASLAIAEETLARL----------------------------A
4	PPA-I	3dmeA	0.269	0.836	3.930	threading_4	DIDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGATLSCRVLINAAGLHAPGLARRIEGIPRDSIPPEKGSYFTLAG--RAPFSRLIYPVPQH--AGLGVHLTLDLGGQAKFGPDTEWI-ATEDYTLDPRRA---------------------------------DVFYAAVRSYWPALPDGALAPGYTGIRPKISGP-HEPAADFAIAGVAGLVNLYGIESPGLTASLAIAEETLARLA----------------------------
5	HHPRED-l	1pj5_A	0.176	0.915	2.666	threading_5	TPRIVIIGAGIVGTNLADELVTR--GWNITVLDQGPLMPGGSTSHAPGLVFQTN---PSKTMASFAKYTVEKLLSLTEDGVSCFNQVGGLEVATTETRLADLKRKLGYAAAWGIEGRLLSPAECQELYPLLNILGGLHVPSDGLASAARAVQLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADGVIPADIVVSCAGFWGAKIGAMIGMAVP--LLPLAHQYVKTTPVPAQQGRNDGARLPILRHQDQDLYYR-EHGDRYGIGSYAHRPMPVDVDTLGAYAPETV----SEHH----------MPSRLDFTLEDFLPAWEATKQLLPALADSEIEDGFNGIFS--FTPDGGPLLGESK-ELDGFYVAEAV---WVTHSAGVAKAMAELLTTGRSGECDITRF-------EDVQLTYV-
6	HHPRED-g	3dme_A	0.258	0.836	2.690	threading_6	DIDCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVPEGGFELDFGGAMTLSCRVLINAAGLHAPGLARRIGIPRDPPEYLCKGSYFTLAGRA--PFSRLIYPVPQHA--GLGVHLTLDLGGQAKFGPDTEWI---ATED-YTLDPR------------------------------RADVFYAAVRSYWPALPDGALAPGYTGIRPKISGPHE-PAADFAIAGVAGLVNLYGIESPGLTASLAIAEETLARLA----------------------------
7	SP3	3dmea	0.266	0.836	4.463	threading_7	DIDCIVIGAGVVGLAIARALAAGG--HEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFEPMTLSCRVLINAAGLHAPGLARRIEGIPRDSIPPCKGSYFTLAGRA--PFSRLIYPVPQH--AGLGVHLTLDLGGQAKFGPDTEW-IATEDYT---LDPRRADV------------------------------FYAAVRSYWPALPDGALAPGYTGIRPK-ISGPHEPAADFAIAGVAGLVNLYGIESPGLTASLAIAEETLARLA----------------------------
8	SAM-T99	3dmeA	0.256	0.832	6.083	threading_8	--DCIVIGAGVVGLAIARALAAG--GHEVLVAEAAEGIGTGTSSRNSEVIHAGIYYPADSLKARLCVRGKHLLYEYCAARGVPHQRLGKLIVATSDAEASQLDSIARRAGANGVDLQHIDGAAARRLEPALHCTAALVSPSTGIVDSHALMLAYQGDAESDGAQLVFHTPLIAGRVRPEGGFELDFGGATLSCRVLINAAGLHAPGLARRIPRDSIPPEYLCKGSYFTLAGRAP--FSRLIYPVPQH--AGLGVHLTLDLGGQAKFGPDTEWIATED----------------------------------YTLDPRRADVFYAAVRSYWPALPDGALAPGYTGIRPKISGP-HEPAADFAIAGPAGLVNLYGIESPGLTASLAIAEETLARLA----------------------------
9	MUSTER	1y56B	0.168	0.860	2.099	threading_9	LSEIVVIGGGIVGVTIAHELAKR--GEEVTVIEKRF-IGSGSTFRCGTGIRQQFNDE---ANVRVMKRSVELWKKYSEEYGFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDIIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKGIIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQPIKRGTINPMVISFKYGH-----AYLTQTFHGGIIGGIG------YEIGPTYDLT----------------------------PTYEFLREVSYYFTKIIPALKNLLILRTWAGYYAKT--PDSNPAIGRI--ELNDYYIAAGFSGHGFMMAPAVGEMVAELITKLPVEWYDPYRFERGELR----------
10	SPARKS	1y56b	0.165	0.863	3.494	threading_10	LSEIVVIGGGIVGVTIAHELAKR--GEEVTVIEKRF-IGSGSTFRCGTGIRQQFNDE---ANVRVMKRSVELWKKYSEEYGFSFKQTGYLFLLYDDEEVKTFKRNIEIQNKFGVPTKLITPEEAKEIVPLLDIIAASWNPTDGKADPFEATTAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKGIIKTGIVVNATNAWANLINAMAGIKTKIPIEPYKHQAVITQPIKRGTINPMVISFKYGH-----AYLTQTFHGGIIGG------IGYEIGPTYDLTP----------------------------TYEFLREVSYYFTKIIPALKNLLILRTWAGYYAK--TPDSNPAIGRI-EELNDYYIAAGFSGHGFMMAPAVGEMVAELITKGKTKLYDPYRFERGELR----------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.758 to 2gb0B SCOP code=c.3.1.2	TM-score=0.758 to 2gb0B SCOP code=c.3.1.2	TM-score=0.762 to 2gb0B SCOP code=c.3.1.2	TM-score=0.770 to 2gb0B SCOP code=c.3.1.2	TM-score=0.756 to 2gb0B SCOP code=c.3.1.2