Template-based Modeling Results for KDSD_ECOLI

Submitted Primary Sequence

>Length 328
MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADVMTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADVMTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV
CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCEEEEECHHHHHHHHHCCCCHHHCCHHHHCCCCCEEECCCCHHHHHHHHHHHCCCCEEEEEECCEEEEEEEHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADVMTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV
5432323321202200220021112002201320233002002300203120000000300100220000002011100001001000000010233000000021131220020020025140200000033301002101000002123321221200000000000000000100021221223101100200110220012011112223301213421203200110133310000001332101000011001200321221321102201131011023111012002102333010000022410000000100131124
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSHVELQPGFDFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGKSGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARGFTAEDFALSHPGGALGRKLLLRVNDIMHTGDEIPHVKKTASLRDALLEVTRKNLGMTVICDDNMMIEGIFTDGDLRRVFDMGVDVRQLSIADVMTPGGIRVRPGILAVEALNLMQSRHITSVMVADGDHLLGVLHMHDLLRAGVV
1	MUSTER	2xhzA	0.994	0.527	1.824	threading_1	----------DFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARG-------------------------------------------------------------------------------------------------------------------------------------------------
2	PROSPECT2	2a3nA	0.135	0.927	2.524	threading_2	LGFNQ---------------DEYLTSAREIIAARQKAEQVADEIYQAGFSSLFFASVGGSLAPAINEFAK-ELTTLPVYVEQAAELIHKGNKRLNKDSVVITLSKSGDTKESVAIAEWCKAQGIRVVAITKNADSPLAQAATWHI--PRHKNGVEYEYLLYWLFFRVLSRNNEFASYDRFASQLEILPANLLKAKQKFDPQADAIASRYHNSDYLFSCILEEQWKRTRPVSSAEFFHGALELLEKDVPLILVKGEGKCRALDERVERFA-----SKITDNLVVIDPKAYALDGIDDEFRWIAPCVVSTLLVDRL-AAHFEKYTGHSLY
3	PROSPECT2	2amlA	0.145	0.884	2.291	threading_3	HHHHHKPTT----------YINEEEECRVILADFQTNAEKLESLVKNGAKEWLILATGSSLNAAQSAKYYIENADVRITIEEPFNHLYYE-KLSSHLDLVIGISQSGQSTSTISALERVKKEAVPVVALTSDVTSEIAEFADITLDIGSGKERVGYVTKGFTATVLTLLTGLHFAYKTVQIDETRFNNEISAFSRIAETEAFYERWQEEFATAPKFTAIGYGPTVGTCKEFETEAFHGPYLEVNPQHRIFFLETASAVTERLVL--------LRDYESKYTPFT-------------------YTVKFGKGEDDRTLVIHIAELKGNA
4	SAM-T99	3k2vA	0.756	0.375	1.947	threading_4	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GALGRKLLLRVNDI-HTGDEIPHVGLQATLRDALLEITRKNLGTAIC--DDDNIIGIFTDGDLRRVFDTGVDRDASIAD--VTRGGIRIRPGTLAVDALN-LQSRHITCVLVADGDHLLGVVH-HDLLRA---
5	SPARKS	2xhza	0.994	0.527	4.524	threading_5	----------DFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARG-------------------------------------------------------------------------------------------------------------------------------------------------
6	PROSPECT2	2xhzA	0.994	0.527	2.817	threading_6	----------DFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARG-------------------------------------------------------------------------------------------------------------------------------------------------
7	PPA-I	2xhzA	0.994	0.527	2.716	threading_7	----------DFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARG-------------------------------------------------------------------------------------------------------------------------------------------------
8	HHPRED-l	3etn_A	0.410	0.543	2.562	threading_8	------------IESIQELLQKEAQ---AVLNIPVDAYEKAVELIVRKKGKLVTSG-GKAGQIA-NIATTFCSTGIPSVFLHPSEAQHGDLGILQENDLLLLISNSGKTREIVELTQLAHNPGLKFIVITGNPDSPLASESDVCLSTGHPAEVCTLG-TPTTSTTV-TVIGDILVVQT-KRTEFTIEEYSKRHHGGYL----------------------------------------------------------------------------------------------------------------------------------
9	HHPRED-g	1nri_A	0.223	0.601	3.005	threading_9	----PNSVDISTLEI-VRL-NEEKLVPLAIESCL-PQISLAVEQIFQQGGRLIYIGAGTSGRLGVLDASECPPTFGVSTE-VKGIIAGGECAIFSKNDVLVGIAASGRTPYVIAGLQYAKSLGALTISIASNPKSE-AEIADIAIETIVGPEILTGS-SRLKSGTAQK-VLN-LTTAS-ILLGKCYENLASNEKLKARAVRIV-QATDCNK---------------------------------------------------------------------------------------------------------------------
10	SP3	2xhza	0.994	0.527	4.559	threading_10	----------DFQQAGKEVLAIERECLAELDQYINQNFTLACEKMFWCKGKVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLGMVTPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMARAADVHLCVKVAKEACPLGLAPTSSTTATLVMGDALAVALLKARG-------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.625 to 1vimA TM-score=0.989 to native SCOP code=c.80.1.3	TM-score=0.724 to 1j5xA TM-score=0.732 to native SCOP code=c.80.1.1	TM-score=0.625 to 1vimA TM-score=0.989 to native SCOP code=c.80.1.3	TM-score=0.679 to 1j5xA TM-score=0.792 to native SCOP code=c.80.1.1	TM-score=0.570 to 2rc3C TM-score=0.263 to native SCOP code=d.37.1.1

Experimental Structure

Download 2xhzB

SCOP code=c.80.1.3