Template-based Modeling Results for KBAY_ECOLI

Submitted Primary Sequence

>Length 286
MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRISA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRISA
CCCCCHHHHHHHHHHCCCEEEEEEECCHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHCCCEEEEECHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRISA
3421203100210331000000000000200200020024230100000020004102130001001100330400000001113113002300300010000100302112004002100200342400010100101123232213232221111310220033020000000000010213221401120012013104010000001302331022004001000000020110001001210332342210220022003001200221022020234234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVEDDMSVDAESAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRISA
1	MUSTER	1gvfB	0.989	0.962	3.564	threading_1	-SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVESAF--------LTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI--
2	SPARKS	3pm6a	0.300	0.979	5.752	threading_2	LKSNRALPLLTFARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYAD-SLLVRTAASACRAASVPITLHLDHAQDPEIIKRAADPGFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVDTVDLEGVLTTPEESEEFVA-TGINWLAPAFGNVHGNYGPRGQLDYERLQRINEAVGVGLVLHGADPFTKEIFEKCIERGVAKVNVNRAVNNEYVKVMREK----AGSLPITRLHEEVTNAMQAAVEKIMDMIDSTGKAEF
3	PROSPECT2	3pm6A	0.296	0.979	4.527	threading_3	LKSNRALPLLTFARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYAD-SLLVRTAASACRAASVPITLHLDHAQDPEIIKRAADPGFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVQTVDLEGVLTTPEESEEFVA-TGINWLAPAFGNVHGNYGPRGQLDYERLQRINEAERVGLVLHGADPFTKEIFEKCIERGVAKVNVNRAVNNEYVKVMREK----AGSLPITRLHEEVTNAMQAAVEKIMDMIDSTGKAEM
4	PPA-I	3q94A	0.388	0.965	6.318	threading_4	-PLVS--KELNKALEGKYAVGQFN-NNLEWTQAILAAAEEEKSPVILGVSEGAARHTGFKTVVAVKALIEENITVPVAIHLDHGSSFEKCKEAIDAGFTSVID-ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG--VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAE-EQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNGKA--
5	HHPRED-l	1gvf_A	1.000	0.955	4.895	threading_5	-SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLG-----------SAFLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRIS-
6	HHPRED-g	3n9r_A	0.399	0.955	4.054	threading_6	-MLVKGNEILLKAHKEGYGVGAFNFVNFEMLNAIFEAGNEENSPLFIQASEGAIKYMGIDMAVGMVKIMCERPHIPVALHLDHGTTFESCEKAVKAGFTSVMIDASHHAFEENLELTSKVVKMAHNAGVSVEAELGRLMGI----------AVLVNPKEAEQFVKESQVDYLAPAIGTSHGAFKGEPKLDFERLQEVKRLTNIPLVLHGASGVPFEFLQESVKGGINKVNTDTDLRIAFIAEVRKVANEDKSQFDLRKFFSPAQLALKNVVKERMKLLGSANKI--
7	SP3	3pm6a	0.300	0.979	6.241	threading_7	LKSNRALPLLTFARTHSFAIPAICVYNLEGILAIIRAAEHKRSPAMILLFPWAIQYADS-LLVRTAASACRAASVPITLHLDHAQDPEIIKRAADPGFDSIMVDMSHFSKEENLRLTRELVAYCNARGIATEAEPGRIEGGEDGVDTVDLEGVLTTPEESEEFVA-TGINWLAPAFGNVHGNYGPRGQLDYERLQRINEAVGVGLVLHGADPFTKEIFEKCIERGVAKVNVNRAVNNEYVKVMREK----AGSLPITRLHEEVTNAMQAAVEKIMDMIDSTGKAEF
8	SAM-T99	1gvfB	0.993	0.962	5.549	threading_8	-SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGGVESA--------FLTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRI--
9	MUSTER	3q94A	0.389	0.962	3.489	threading_9	-PLVS--KELNKALEGKYAVGQFN-NNLEWTQAILAAAEEEKSPVILGVSEGAARHTGFKTVVAVKALIEENITVPVAIHLDHGSSFEKCKEAIDAGFTSVI--ASHHPFEENVETTKKVVEYAHARNVSVEAELGTVGGQEDDVIAEG--VIYADPAECKHLVEATGIDCLAPALGSVHGPYKGEPNLGFAE-EQVRDFTGVPLVLHGGTGIPTADIEKAISLGTSKINVNTENQIEFTKAVREVLNKDQEVYDPRKFIGPGRDAIKATVIGKIREFGSNGKA--
10	SPARKS	1gvfa	0.989	0.955	5.644	threading_10	-SIISTKYLLQDAQANGYAVPAFNIHNAETIQAILEVCSEMRSPVILAGTPGTFKHIALEEIYALCSAYSTTYNMPLALHLDHHESLDDIRRKVHAGVRSAMIDGSHFPFAENVKLVKSVVDFCHSQDCSVEAELGRLGSAF-----------LTDPQEAKRFVELTGVDSLAVAIGTAHGLYSKTPKIDFQRLAEIREVVDVPLVLHGASDVPDEFVRRTIELGVTKVNVATELKIAFAGAVKAWFAENPQGNDPRYYMRVGMDAMKEVVRNKINVCGSANRIS-

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.979 to 1gvfB TM-score=0.998 to native SCOP code=c.1.10.2	TM-score=0.939 to 1gvfB TM-score=0.957 to native SCOP code=c.1.10.2	TM-score=0.897 to 1gvfB TM-score=0.914 to native SCOP code=c.1.10.2	TM-score=0.893 to 1gvfB TM-score=0.909 to native SCOP code=c.1.10.2	TM-score=0.938 to 1gvfB TM-score=0.955 to native SCOP code=c.1.10.2

Experimental Structure

Download 1gvfB

SCOP code=c.1.10.2