Template-based Modeling Results for HYCD_ECOLI

Submitted Primary Sequence

>Length 307
MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLAFVSLLAA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLAFVSLLAA
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLAFVSLLAA
2410100010000000000010011002121212401100120110020012221114211100100000000000000001111211111121000000000000010010000012101100000011002001110000000000000011010110010111100010000000000000000021130112103112001310002100010000000100100000000000000112132121000000000000100000000000010002000010010000000000000000114
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSVLYPLIQALVLFAVAPLLSGITRVARARLHNRRGPGVLQEYRDIIKLLGRQSVGPDASGWVFRLTPYVMVGVMLTIATALPVVTVGSPLPQLGDLITLLYLFAIARFFFAISGLDTGSPFTAIGASREAMLGVLVEPMLLLGLWVAAQVAGSTNISNITDTVYHWPLSQSIPLVLALCACAFATFIEMGKLPFDLAEAEQELQEGPLSEYSGSGFGVMKWGISLKQLVVLQMFVGVFIPWGQMETFTAGGLLLALVIAIVKLVVGVLVIALFENSMARLRLDITPRITWAGFGFAFLAFVSLLAA
1	SPARKS	2xwub	0.087	0.932	1.120	threading_1	VAVSQDVLTSQCMWLMQALGFLLVEEILKNLHS-----LISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTT-------------LDISHPNPVVVVLQQVFQLIQKVLSKWLNDAVEAVCAIFEKSVKTLLDDFAPMVPQLCEMLGRMASALDLTRQLVHIFEPAHFPPIEALFLLVTSVTLTLFQQGPRDHPDLLAQALKRKPDLFLCERLDVKAVFQCAVLALAPTVKASCGF---FTELLPRCGEVESVGKVVQERMLLIAVLEAIGGQASRSLMDCFADILFALNKFSLLSMWIKEAL
2	PROSPECT2	3a6pA1	0.101	1.000	1.459	threading_2	CEQLVKAVTVMVRHFGLQILVYLKNSVMELIANGTLNIIKDALSRIVVEMIKREWPQHWPDMLETQTELVMFILLRLAEDVVTFQTLPPQRQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLACKLLEILCLLLNEQELQLGAAECLLIAVLEDRKPLMVLFGDVAMHYILSATADGGGLVEKHYVFLKRVLCALGNQLCALLGFGKYLESFLAFTSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLSCEYSRFDFDRAQQGEVMRLACRLDPKTSFQMAGEWLK
3	PPA-I	3zuxA	0.105	0.779	1.135	threading_3	KHPKVVIIGVIAQFAIMPATAWCLSKLLN---------LPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLI--VHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLP---------------------YDAQKALTIEVGMQNSGLAAALAAAHFAAA------PVVAVPGALFSVWHNISGSLLATYWAAKA------------------------------
4	SPARKS	2x19b	0.102	0.928	1.072	threading_4	ASALHIKISRYWSDIPTDQYESLKAQLFTQITFASGSKVLTRLCVALASLALSPDAPCAVADVRLFQGRCLALLELLTVLPEEFQTSRLTSLAECGAVFPLLEQLLQ--------QPSSPSCVRQKVLKCFSSWVQLEVPLQEALIQAAFAALQDSVEAIVNAISQPDAQRYVNTLLKLIPLVQEQLRQAVQNGDETSHGICRIAVALGENH------SRALLDQVEHWQSFLALVNIFCTGIPGHYPVNETTSSLTLTFWYTLQDDI-------LSFEAEKQAVYQQVY-RPVYFQLVDVLLHKAQ
5	PROSPECT2	1jdha	0.094	1.000	1.419	threading_5	QVVVNKAAVMVHQLMVSAIVRTMQNTTLHNLLLHQEGGGLQKMVALLNIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVEDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVPPSHWPLIKATVGLIRNLLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQ
6	PPA-I	3g61A1	0.069	0.850	1.058	threading_6	AAIIHGVALPLMMLIFGDMTDSFASVGNVSKNS------------------------TNMSEADKRAMFAKLEEEMTTYAY---------------YYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVHDVGELN---TRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGF---TRIGQVLTVFFSVLIG-AFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSGWQLTLLLLAIVPIIAIAGVVEMKMLSGQFETMYAQSLQIPYRNAMKKAHVFGITFSF
7	SPARKS	2bkub	0.078	0.915	1.065	threading_7	LPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLQDHVATNCSWTIINLVEQLA-----------EATPSPIYNFYPALVDGLIGAANRIDN-------EFNARASAFSALTTMVEYATDTVAETSASISTFVMD---KLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKPSSVEPVADMLMGLFFRLLEKKD--SAFIEDDVFYAISALAASL---GKGFEKYLETFSPYLLKALSPVSITAVGFIADISNSLEEDFRSDAMMNVLAQMILKPAVLSVFGDIA
8	PROSPECT2	1ejlI	0.127	1.000	1.415	threading_8	LQATQAARKLLIQFESAWALTNISEQTKAVVDGGASPHIAGDGSAFRDLVIKHGAIDLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNIQKEATWTMSNITAGRQDQIQQVVNLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEESVYKASLNLIEKYFS
9	PROSPECT2	3a0oA3	0.081	0.967	1.401	threading_9	GRS--------ARHAAAQLNSEQLSAFADAVAKDPNHGWAEFYEKSVEPWLERPVMPEPQPMYIDCQEVIYAIRHLAIAGRVLGRAWDTKGATSRAYNDEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTRE--VADHVIAHARIHVFPYDSHAVRSLSAVLTPACIDEAGEWLDYTVEFLATLYSPWAGTDGGWAEGPHYWMTGMAYLIEAANLIRSYIPFFQNTGRFPLYTKAPDSTLGDLPGLKLGYNVRQFAGVTHYQWYFDHIKADATGTEMAFYNYGWWDLNFDDLVYRHDYPQV
10	PROSPECT2	3ibvA1	0.102	0.827	1.393	threading_10	MSA-----------------QDVENAVEAALDPSVGPIIKQQATDFIGSLRSSS------------------TGWKICHEIFSEKTKYK---------PSTRLICLQTLSEKVREWNNESNLLELQMIRDSVWSYIKENAVQHLLTLLFLQLYPSNWNDFFASQGVIAASSQSEFSNFYLKVLLSIGDEIADSLVLKTDVQIQKDNLVKDAIRANDMSDIVSFVYYGTVGLCLQVYAQWVSWININLIVNEPCMNLLYSFLLRCAACETMTEIVNKKMKPLEKLNLLNI---------LNLNLFFSK

Predicted Tertiary Structure


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TM-score=0.680 to 1xqrA SCOP code=a.118.1.21	TM-score=0.597 to 1u6gC SCOP code=a.118.1.2	TM-score=0.427 to 1j30A SCOP code=a.25.1.1	TM-score=0.623 to 1u6gC SCOP code=a.118.1.2	TM-score=0.602 to 1wa5B SCOP code=a.118.1.1