Template-based Modeling Results for HSLV_ECOLI

Submitted Primary Sequence

>Length 176
MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA
CCEEEEEEECCEEEEEECCCCCCCCEEEECCEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEECCCCCEEEEECCCEEEECCCEEEECCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCEEEECCCEEEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA
42110002222100000102011110002120210130133200000000010011002102210222313012000200121202200220000000014310000101030011221000101001001000200131232203200120020001000001310101102345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA
1	MUSTER	1nedB	1.000	0.994	4.021	threading_1	-TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA
2	SPARKS	1jjwa	0.797	0.977	5.483	threading_2	-TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEDQILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELP---
3	PROSPECT2	1m4yA	0.667	0.972	3.203	threading_3	-TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIAGEICIYTNQNIVIEEV----
4	PPA-I	1m4yA	0.667	0.972	5.415	threading_4	-TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIAGEICIYTNQNIVIEEV----
5	HHPRED-l	1iru_H	0.191	0.983	2.404	threading_5	-TTIMAVQFDGGVVLGADSRTTTGSYIANRVTDKLTPIHDRI-FCCRSGSAADTQAVADAVTYQLGFHEPPLVHTAASLFKEMCYRREDLMAGIIIAGWDPEGGQVYSVPMGGMMVRQSFAIGGSGSSYIYGYVDATYRMTKEECLQFTANALALAMERDGSSGGVIRLAAIAES-
6	HHPRED-g	1m4y_A	0.667	0.972	3.235	threading_6	-TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIAGEICIYTNQNIVIEEV----
7	SP3	1jjwa	0.802	0.977	5.103	threading_7	-TTIVSVRRNGQVVVGGDGQVSLGNTVMKGNARKVRRLYNGKVLAGFAGGTADAFTLFELFERKLEMHQGHLLKSAVELAKDWRTDRALRKLEAMLIVADEKESLIITGIGDVVQPEEDILAIGSGGNYALSAARALVENTELSAHEIVEKSLRIAGDICVFTNTNFTIEELP---
8	SAM-T99	1nedB	1.000	0.994	4.684	threading_8	-TTIVSVRRNGHVVIAGDGQATLGNTVMKGNVKKVRRLYNDKVIAGFAGGTADAFTLFELFERKLEMHQGHLVKAAVELAKDWRTDRMLRKLEALLAVADETASLIITGNGDVVQPENDLIAIGSGGPYAQAAARALLENTELSAREIAEKALDIAGDICIYTNHFHTIEELSYKA
9	MUSTER	1m4yA	0.667	0.972	3.958	threading_9	-TTILVVRRNGQTVMGGDGQVTFGSTVLKGNARKVRKLGEGKVLAGFAGSVADAMTLFDRFEAKLREWGGNLTKAAVELAKDWRTDRVLRRLEALLLVADKENIFIISGNGEVIQPDDDAAAIGSGGPYALAAAKALLRNTDLSAREIVEKAMTIAGEICIYTNQNIVIEEV----
10	SPARKS	1pma1	0.190	0.989	2.962	threading_10	-TTTVGITLKDAVIMATERRVTMENFIMHKNGKKLFQI-DTYTGMTIAGLVGDAQVLVRYMKAELELYVNMPIEAVATLLSNMLNQVKYMPYMVQLLVGGDTAPHVFSIDAAGGSVEDIYASTGSGSPFVYGVLESQYKMTVDEGVDLVIRAISAAKQRDSASGGMIDVAVITRKD

Predicted Tertiary Structure


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TM-score=0.979 to 1nedB TM-score=0.995 to native SCOP code=d.153.1.4	TM-score=0.979 to 1nedB TM-score=0.995 to native SCOP code=d.153.1.4	TM-score=0.958 to 1m4yA TM-score=0.971 to native SCOP code=d.153.1.4	TM-score=0.984 to 1m4yA TM-score=0.953 to native SCOP code=d.153.1.4	TM-score=0.984 to 1m4yA TM-score=0.953 to native SCOP code=d.153.1.4

Experimental Structure

Download 1nedA

SCOP code=d.153.1.4