Template-based Modeling Results for GSPF_ECOLI

Submitted Primary Sequence

>Length 398
MNYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN
CEEEEEEECCCCCEEEEEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN
12020101154122020102032231013203522110010223333224234341223100100210020031201022001000331223300300220121024132002003312210120010002002411202200220021132133113301401210000000000000000010012013002413331220020000002001200000000000000001111322301210100002001002000000001002000000202020020020003002123022101200210331220110023021013100100100241120120022002202210221021012101000000000000000011010112123214
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNYRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTRRPRISHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQHFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIGVVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLATVFIVAVGFWLWLKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNLEIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETLQQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN
1	PROSPECT2	3a6pA1	0.087	0.920	1.641	threading_1	-------------------AMDQVNALCEQLVK-------------AVTVMMDPNSTQRYRLEALKFCEEFKEKCPICVPCGLRLAEKTQVAILKNSVMELIANGTLNILLSRIVREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLQRRRDIQQTLTQNMERIFSFLLNTLQENVNANCRVGVAALNTLAGYIDWVSMSHKLLEILCLLLNEQELQLGAAECLLIAVPLMVLFGDVAMHYILSAAQTADGGGHYVFLKRLCQVLCALGNQLCTPSNFGKYLESFLAFTTHQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWLKYQLS
2	SPARKS	2whna	0.345	0.276	2.944	threading_2	----------------------------------------------VRIPALERGPGLKDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHK-IFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1w63A	0.115	0.985	1.641	threading_3	MP------APIRELIRTIRTARTQAEEREMIQKECAAIRSSFREEDNTYRCRLLDERQDVHLLMTNCIKNDLNHSTQFVQALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYALCAVHVIRKVPELMEMFLPATKNLLNLHTSVVLLTEMCERSPDMLAHFRKLVPQLVRILKNLIMVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLSLLKTVQTDAVQRHRSTIVDCLKDLDVKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPIFLAAEKYAPSKRWHIDTIMGSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILPLVQVAAWCIGEYGDLLALTAIMKLSTRFT
4	PPA-I	2vmbA	0.479	0.304	1.940	threading_4	------------------------------------------------GFAFKRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQASENLYF-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1jdha	0.098	0.945	1.636	threading_5	------AVVNLIRAIPKLLNDEDQVVVNKAAVM-------VHQLSKKEASRHAIMRSPQMVSAIVRTMQAIFKSG--GIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG-----GLQKMVALLNKTN--VKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVMQASQRLVQNCLWTLRNLSVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVREDITEPAICALRHLTSRHQEAEMAQNAVRLHPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQFMEEIVEGCTVHNRIVIRGLIPLFVQLLYIENIQRVAAGVLCELAQDKEAAEAIEARMS
6	HHPRED-l	3c1q_A	0.523	0.279	4.709	threading_6	-------------------------------------------------FAFKRGISTPDLALITRQLATLVQSG-PLEECLRAVAEQSEKPRIRT-LVAVRAKVTEGYTLSDSLGDYPHVFDELFRS-VAAGEKSGHLDSVLERLADYAENRQK-RSKLQQAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	PROSPECT2	1b3ua	0.108	0.977	1.621	threading_7	A-----AADGDDSVLIDELRNEDVQLRLNSIKRSELLPFLTDTIYDEDGTFTTLVGGPEYVHCLLPPLESLATVEETAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTGLFSVCYPRVSSELRQYFRNLCSDDTPMAAASKLGEFAKELDNVKSEIIPMFSNLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKELPCIKELVKDNTIEHLLPLFLAQLKDECPIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAII----EYMPLLAGQLGVEFFDEKLNSLCMAWLVEAATSNLKKLVEKFGKEWAHAMTTLFCINVLSEVCGQDITTKHMA
8	HHPRED-g	3c1q_A	0.523	0.279	4.388	threading_8	-------------------------------------------------FAFKRGISTPDLALITRQLATLVQSG-PLEECLRAVAEQSEKPRIRT-LVAVRAKVTEGYTLSDSLGDYPHVFDELFRS-VAAGEKSGHLDSVLERLADYAENRQK-RSKLQQAS------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	2vmbA	0.496	0.294	0.853	threading_9	------------------------------------------------GFAFKRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAS-F----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SP3	2whna	0.345	0.276	2.815	threading_10	----------------------------------------------VRIPALERGPGLKDLAIFSRQLATMLGAGLTLLQALAILERQTENRKFREILKQVRTDVEGGMAFSEALSKHK-IFSRLYVNLVRAGETSGGLDLILDRLASFLEKELELR-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


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TM-score=0.605 to 1ialA SCOP code=a.118.1.1	TM-score=0.386 to 4hb1A SCOP code=k.8.1.1	TM-score=0.726 to 1w63C SCOP code=i.23.1.1	TM-score=0.409 to 2r2vA SCOP code=h.1.3.1	TM-score=0.567 to 1wa5B SCOP code=a.118.1.1