Template-based Modeling Results for HLDE_ECOLI

Submitted Primary Sequence

>Length 477
MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVNTIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASVQQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMKLIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAAGNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAAARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNPLEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANGGEVLVLNFEDGCSTTNIIKKIQQDKKG
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVNTIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASVQQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMKLIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAAGNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAAARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNPLEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANGGEVLVLNFEDGCSTTNIIKKIQQDKKG
CCCCHHHHCCCCEEEEEEEEEEEEEEECCCCCCCCCCCCEEEEEEEEECCCHHHHHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHCCCEEEEEEECCCCCCEEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHCCCCEECCCHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCEEEEECCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHEEEEEECCCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHCCCEEEECCCCCCCCCCCHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHCCC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVNTIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASVQQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMKLIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAAGNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAAARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNPLEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANGGEVLVLNFEDGCSTTNIIKKIQQDKKG
542212313321000000000010000212311241212002010022111100000000010201010000002131021003002424020100102332110100001333100000033103221131013102301320100000121300120022002003512120001131011310200100001121011002223233300220031023130100000113300000122321010113223122110001000000000012212022001001100000012222221122111101312232211212231022002103532110000100011001000100110351010000001122013313132211112210000001030000000133210320021010100020231323311103102322010000212320011300220243355
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKVTLPEFERAGVMVVGDVMLDRYWYGPTSRISPEAPVPVVKVNTIEERPGGAANVAMNIASLGANARLVGLTGIDDAARALSKSLADVNVKCDFVSVPTHPTITKLRVLSRNQQLIRLDFEEGFEGVDPQPLHERINQALSSIGALVLSDYAKGALASVQQMIQLARKAGVPVLIDPKGTDFERYRGATLLTPNLSEFEAVVGKCKTEEEIVERGMKLIADYELSALLVTRSEQGMSLLQPGKAPLHMPTQAQEVYDVTGAGDTVIGVLAATLAAGNSLEEACFFANAAAGVVVGKLGTSTVSPIELENAVRGRADTGFGVMTEEELKLAVAAARKRGEKVVMTNGVFDILHAGHVSYLANARKLGDRLIVAVNSDASTKRLKGDSRPVNPLEQRMIVLGALEAVDWVVSFEEDTPQRLIAGILPDLLVKGGDYKPEEIAGSKEVWANGGEVLVLNFEDGCSTTNIIKKIQQDKKG
1	MUSTER	2nwhA	0.225	0.625	1.407	threading_1	MK---------KILVLGGAHIDRRGMIE-TETAPGASNP---GSWMEEAGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVVAEAARQAGVEDTPFTFLDRRTPSYTAILERDGNLVIALAMDLYKLFTPRRLKRAVREAIIASDFLLCD--ANLPEDTLTALGLIARACEKPLAAIPAKAVKAALGDIDILFMNEAEARALTG--------VRDWPNILRKAGLSGGVVTRGASEVVAFNGTEKAILHPPLIREVKDVTGAGDAMASGYLAAIAEGKTIREALRQGAAAAAITVQSSFATSLSKDSVEAMLGLVPQAEML------------------------------------------------------------------------------------------------------------------------------------------------------------
2	SPARKS	2fv7a	0.230	0.629	3.092	threading_2	---------VAAVVVVGSCMTDLVSLTSRL---PKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRA-AANVISRAKVMVCQLEI--TPATSLEALTMARRSGVKTLFNPAPADPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPLTLF------------------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	1rkd_	0.225	0.633	2.471	threading_3	---------AGSLVVLGSINADHILNLQ----SFPTPGETVTGNHYQVAFGGGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITPVSVIKGESTGVALIFVNGEGENVIGIHAGANAALSPALVEAQRERIANASALLMQLE--SPLESVMAAAKIAHQNKTIVALNPAPARDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASV-NGEGQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGA----------------------------------------------------------------------------------------------------------------------------------------QPSVPWREEIDA-----------------------FLDRQR
4	PPA-I	2nwhA	0.197	0.629	2.104	threading_4	---------MKKILVLGGAHIDRRGMIE-TETAPGASNP---GSWMEEAGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVVAEAARQAGVEDTPFTFLDRRTPSYTAILERDGNLVIALADMDLYKLFRRLKVRAVREAIIASDFLLCD--ANLPEDTLTALGLIARACEKPLAAIAAVKLKAALGDIDILFMNEAEARALTGVR--------DWPNILRKAGLSGGVVTRGASEVVAFNGTEKAILHPPLIREVKDVTGAGDAMASGYLAAIAEGKTIREALRQGAAAAAITVQSSFATSQDLSKDSVEAMLGLVPQAEML----------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	2fv7_A	0.232	0.623	2.252	threading_5	---------VAAVVVVGSCMTDLVSL--TSRLPK--TGETIHGHKFFIGFGGKANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQKDAATGTASIIVNNEGQNIIVIVAGANLLL-NTEDLRAAANVISRAKVMVCQLEI--TPATSLEALTMARRSGVKTLFNPAPAIPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQTPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLYPNLSLEDMLNRSNFIAAVSVQAAGTQSPYKKDLPLTLF--------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	2jg1_A	0.155	0.637	1.789	threading_6	--GLVPRGSH-ILTLTLNPSVDISYPLT--AL---KLDDVNRVQEVSKTAGGKGNVTRVLAQVGEPVLASGFIG-GELGQFIAKKLDHADIKHAFYNIKG-ETRNCIAILHEG-QQTEILEQGEIDNQEAAGFIKHFEQ--EKVEAVAISGSLPKGQDYYAQIIERCQNKGVPVILDCSGATLQTVYKPTVIKPNISELYQLLNQPLSLESLKQAVSQPL-FEGIEWIIVSLGAQGAFAKHNH-TFYRVNIPTISVLNPVGSGDSTVAGITSAILNHENDHDLLKKANTLG-LNAQEAQTGYVNLNNYDDLFNQIEVLEV-------------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	2fv7a	0.240	0.629	3.024	threading_7	V---------AAVVVVGSCMTDLVSL--TSRL-PKTGETIHGHKFFIGFGGKGANQCVQAARLGAMTSMVCKVGKDSFGNDYIENLKQNDISTEFTYQKDAATGTASIIVNNEGQNIIVIVAGANLLLNTEDLRA-AANVISRAKVMVCQLE--ITPATSLEALTMARRSGVKTLFNPAPADPQFYTLSDVFCCNESEAEILTGLTVGSAADAGEAALVLLKRGCQVVIITLGAEGCVVLSQEPEPKHIPTEKVKAVDTTGAGDSFVGALAFYLAPNLSLEDMLNRSNFIAAVSVQAAGTQSSYPYKKDLPLTLF------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	SAM-T99	1vm7A	0.254	0.595	3.157	threading_8	------------ISVVGSSNIDIVLKVDHFTKPGET----QKAIEMNVFPGGKGNQAVTVAKIGEKCRFVTCIGNDDYSDLLIENYEKLGITGYI--RVSLPTGRAFIEVDKTQNRIII--FPGANAELKKELIDW--NTLSESDILLLQ--------NEIPTLECAKRFNGIVIFDPAPINEEIFQYLDYLTPNEKEIEALSKDFFGEFLTVEKAAEKFLELGVKNVIVKLGDKGVLLVNKN-EKKHFPTFKVKAVDTTAAGDVFNGAFAVALSEGKNPEEAVIFGTAAAAISVTRLGAQSSIPEEVEAFLKNL------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	1rk2B	0.207	0.629	1.342	threading_9	--------NAGSLVVLGSINADHILNLQ--SF-PTPGETVTGNHYQVAFGGKGANQAVAAGRSGANIAFIACTGDDSIGESVRQQLATDNIDITVSVIKGESTGVALIFVNGEGENVIGIHAGANAALS-PALVEAQRERIANASALLMQ--LESPLESVMAAAKIAHQNKTIVALNPAPAPDELLALVDIITPNETEAEKLTGIRVENDEDAAKAAQVLHEKGIRTVLITLGSRGVWASVNGE-GQRVPGFRVQAVDTIAAGDTFNGALITALLEEKPLPEAIRFAHAAAAIAVTRKGAQPSWREEIDAFLDRQ------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SPARKS	2nwha	0.217	0.629	2.855	threading_10	MK---------KILVLGGAHIDRRGMIET-ETAPGASNP---GSWMEEAGGGGFNAARNLSRLGFEVRIIAPRGGDVTGEVVAEAARQAGVEDTPFTFLDRRTPSYTAILERDGNLVIALADDLYKLFTPRRLVRAVREAIIASDFLLCD--ANLPEDTLTALGLIARACEKPLAASPAKAVKAALGDIDILFMNEAEARALTGVRD--------WPNILRKAGLSGGVVTRGASEVVAFNGTEKAILHPPLIREVKDVTGAGDAMASGYLAAIAEGKTIREALRQGAAAAAITVQSSFATSQDLSKDSVEAMLGLVPQAEML----------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.708 to 1vm7A SCOP code=c.72.1.1	TM-score=0.699 to 2fv7A SCOP code=c.72.1.1	TM-score=0.795 to 2fv7A SCOP code=c.72.1.1	TM-score=0.782 to 1rk2B SCOP code=c.72.1.1	TM-score=0.695 to 2fv7A SCOP code=c.72.1.1