Template-based Modeling Results for HFLC_ECOLI

Submitted Primary Sequence

>Length 334
MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSAGTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSAGTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
CHHHHHHHHHHHHHHHHHEEEEECCCEEEEEEECCCEEECCCCCCEEECCCEEEECCCCCEEEEEEEEEEEECCCCCEEEECCCCEEEEEEEEEEEECCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCHHHHHHCCCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSAGTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
4330010000000000100000033222000110020122332322012100002000021011010211102241220003343201000000010110020012112221220110023101220122013130320023232201220221012001101232112211211131023112213121111112002311020010202202113300300122131122110322312122212212121122112111212320211202010210210021133122001002002002300333321000122030021133233234
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRKSVIAIIIIVLVVLYMSVFVVKEGERGITLRFGKVLRDDDNKPLVYEPGLHFKIPFIETVKMLDARIQTMDNQADRFVTKEKKDLIVDSYIKWRISDFSRYYLATGGGDISQAEVLLKRKFSDRLRSEIGRLDVKDIVTDSRGRLTLEVRDALNSGSAGTEDEVTTPAADNAIAEAAERVTAETKGKVPVINPNSMAALGIEVVDVRIKQINLPTEVSEAIYNRMRAEREAVARRHRSQGQEEAEKLRATADYEVTRTLAEAERQGRIMRGEGDAEAAKLFADAFSKDPDFYAFIRSLRAYENSFSGNQDVMVMSPDSDFFRYMKTPTSATR
1	MUSTER	3bk6A	0.250	0.503	1.184	threading_1	-------------------------------------------------------M-IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQV-----KNYIMATSQISQTTLRSVIGQAHLDELLSE---------RDKLNMQLQRIIDEATDP-------------------------------WGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISE-MALQLRTLQT----------------------------------------------------------------
2	SPARKS	3bk6a	0.243	0.506	3.146	threading_2	--------------------------------------------------------MIFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVT-----QVKNYIMATSQISQTTLRSVIGQAHLDELLSE---------RDKLNMQLQRIIDEAT-------------------------------DPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISHPMALQLRTLQT----------------------------------------------------------------
3	PROSPECT2	3bk6A	0.219	0.506	2.364	threading_3	M--------------------------------------------------------IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKN-----YIMATSQISQTTLRSVIGQAHLDELLSE-RDKLNMQLQRIIDEAT---------------------------------------DPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAEIISEHPMALQLRT----------------------------------------------------------------LQT
4	PPA-I	3bk6A	0.249	0.506	1.651	threading_4	--------------------------------------------------------MIFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVK-----NYIMATSQISQTTLRSVIGQAHLDELLSE---------RDKLNMQLQRIIDEATDP-------------------------------WGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISEHMALQLRTLQT----------------------------------------------------------------
5	HHPRED-l	3bk6_A	0.235	0.509	5.662	threading_5	--------------------------------------------------------MIFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKN-----YIMATSQISQTTLRSVIGQAHLDELLSE-RDKLNMQLQRIID---------------------------------------EATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQA---------------AEKLREA-----------AEIIS----EHPM-ALQLRTLQT--------------------------------
6	HHPRED-g	3bk6_A	0.224	0.509	5.663	threading_6	--------------------------------------------------------MIFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVK--NYI---MATSQISQTTLRSVIGQAHLDELLSERDKL-NMQLQ---------------------------------------RIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLR--------------------------EAAEIISEH----PM-ALQLRTLQT--------------------------------
7	SP3	3bk6a	0.243	0.506	2.659	threading_7	-------------------------------------------------------M-IFEKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVT-----QVKNYIMATSQISQTTLRSVIGQAHLDELLSE---------RDKLNMQLQRIIDEAT-------------------------------DPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREAAEIISHPMALQLRTLQT----------------------------------------------------------------
8	SAM-T99	3bk6A	0.230	0.494	5.801	threading_8	-----------------------------------------------------------EKAVIVDLRTQVLDVPVQETITKDNVPVRVNAVVYFRVVDPVKAVTQVKN-----YIMATSQISQTTLRSVIGQAHLDELLSE----------------------------------------RDKLNMQLQRIIDEATDPWGIKVTAVEIKDVELPAGMQKAMARQAEAERERRARITLAEAERQAAEKLREA------------------------------AEIISEHP---LQLRTLQT--------------------------------
9	MUSTER	2rpbA	0.200	0.329	0.688	threading_9	---------------------------------------------------------------HVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVY-----NVSDFLMAIVKLAQTNLRAIIGEMELDETLSG---------RDIINARLREELDKITDR-------------------------------WGVKITRVEIQRIDPPKD--------------------------------------------------------------------------------------------------------------------
10	SPARKS	2rpba	0.195	0.338	2.338	threading_10	------------------------------------------------------------GSDHVDLREHVIDVPPQEVICKDNVVVTVDAVVYYQVIDPVKAVY-----NVSDFLMAIVKLAQTNLRAIIGEMELDETLSG---------RDIINARLREELDKIT-------------------------------DRWGVKITRVEIQRIDPPKD--------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.532 to 1winA SCOP code=d.43.2.1	TM-score=0.513 to 1winA SCOP code=d.43.2.1	TM-score=0.532 to 1winA SCOP code=d.43.2.1	TM-score=0.486 to 1winA SCOP code=d.43.2.1	TM-score=0.551 to 1winA SCOP code=d.43.2.1