Template-based Modeling Results for HDA_ECOLI

Submitted Primary Sequence

>Length 233
MNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILKL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILKL
CCCCCCCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHCCCCCHHHHHHHHCCCEEEECCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILKL
54232212120211332001101103011000000200432220100000231001000010000102431320000002201200220020033000000010210132321120001002201312310000002211320320232000102100002022122321020011103333130132002000320322022003001100200112323011210220143
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MNTPAQLSLPLYLPDDETFASFWPGDNSSLLAALQNVLRQEHSGYIYLWAREGAGRSHLLHAACAELSQRGDAVGYVPLDKRTWFVPEVLDGMEHLSLVCIDNIECIAGDELWEMAIFDLYNRILESGKTRLLITGDRPPRQLNLGLPDLASRLDWGQIYKLQPLSDEDKLQALQLRARLRGFELPEDVGRFLLKRLDREMRTLFMTLDQLDRASITAQRKLTIPFVKEILKL
1	MUSTER	3bosB	0.491	0.953	3.125	threading_1	---PLQLSLPVHLPDDETFTSYYPAAGNDELIGALKSAASGDGQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKR-GSLIVSASASPEAGFVLPDLVSR-HWGLTYQLQPDD--EKLAALQRRAAR-GLQLPEDVGRFLLNRA-RDLRTLFDVLDRLDKAS-VHQRKLTIPFVKEL-RL
2	SPARKS	3sc3a	0.453	0.871	4.634	threading_2	---------------------YP-AAGNDELIGALKSAASGDGQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKR-GSLIVSASASPEAGFVLPDLVSR-HWGLTYQLQPDD--EKLAALQRRAA-RGLQLPEDVGRFLLNRAR-DLRTLFDVLDRLDKA-SVHQRKLTIPFVKELRL-
3	PROSPECT2	2z4rA	0.225	0.953	3.541	threading_3	----------TPLNPDYTFENFVVGPGNSFAYHAALEVAKHPGNPLFIYGGVGLGKTHLLQSIGNYVVQPDLRVMYITSEKFLNDLVDSMKYRKKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKP
4	PPA-I	2z4sA	0.225	0.953	4.687	threading_4	----------TPLNPDYTFENFVVGPGNSFAYHAALEVAKHPGNPLFIYGGVGLGKTHLLQSIGNYVVQNEPRVMYITDSMKEGKLNEFREKYRKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKD
5	HHPRED-l	3bos_A	0.514	0.936	2.657	threading_5	----LQLSLPVHLPDDETFTSYYP--GNDLIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKRGSLIVSASASP-EAGFVLPDLVSR-HWGLTYQLQP--DDEKLAALQRRAA-RGLQLPEDVGRFLLNR-ARDLRTLFDVLDRLDKAS-VHQRKLTIPFVKE-LR-
6	HHPRED-g	1l8q_A	0.203	0.931	5.184	threading_6	----------DFLNPKYTLENFIVGEGNRLAYEVVKEALENLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQA-NEFRN-YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEK-QIILASDRHPQKLDGVSDRLVSRFEGGILVEIE-LDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-KNVREIEGKIKLIKLKGFLERKRDKL-FVANYYAV
7	SP3	3sc3a	0.463	0.871	4.972	threading_7	---------------------YP-AAGNDELIGALKSAASGDGQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTALLEGLEQFDLICIDDVDAVAGHPLWEEAIFDLYNRVAEQKR-GSLIVSASASPEAGFVLPDLVSRH-WGLTYQLQPDD--EKLAALQRRAA-RGLQLPEDVGRFLLNRA-RDLRTLFDVLDRLDKA-SVHQRKLTIPFVKELR-L
8	SAM-T99	2z4sA	0.231	0.948	5.046	threading_8	----------TPLNPDYTFENFVVGPGNSFAYHAALEVAKHPYNPLFIYGGVGLGKTHLLQSIGNYVVQNDLRVMYITSEKFLNDLVEFREKYRKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLK-
9	MUSTER	2z4sA	0.225	0.953	3.112	threading_9	----------TPLNPDYTFENFVVGPGNSFAYHAALEVAKHPGNPLFIYGGVGLGKTHLLQSIGNYVVQNEPRVMYITDSMKEGKLNEFREKYRKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKI
10	SPARKS	2z4ra	0.225	0.953	4.073	threading_10	----------TPLNPDYTFENFVVGPGNSFAYHAALEVAKHPGNPLFIYGGVGLGKTHLLQSIGNYVVQNEPRVMYITSEKFLNDLVDSMKEGKLVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGK-QIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAIIKLLVYKETTGKEVDLKEAILLLKI

Predicted Tertiary Structure


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TM-score=0.699 to 1l8qA SCOP code=a.4.12.2	TM-score=0.698 to 1l8qA SCOP code=a.4.12.2	TM-score=0.649 to 1l8qA SCOP code=a.4.12.2	TM-score=0.754 to 1l8qA SCOP code=a.4.12.2	TM-score=0.729 to 1l8qA SCOP code=a.4.12.2