Template-based Modeling Results for GMR_ECOLI

Submitted Primary Sequence

>Length 661
MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA
CCCHHHHHHHHHHCCCCCCCEECCCHHHHHCCCHHHCCCCCCEECCCHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHHCCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEEEEEEEEEEECCCCCEEEEEEEEEEHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCEEECCEEEEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCEEECCCCEEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHCCCCHHHHHHHHHHHHCCCHHHEEEEEEHHHHHCCHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA
5532311111111101211001013111102022221133311120112102202311322110001011352201010001201222221000102212110221230111022003302200000014010010030013002022220122101201213422220221022014323112010102225131000000000021334210000000000121330131010001011011000010012001200230332200000000110320100100100110021002001400333100010101100000231232102200220022032102024010000000000001421320110020001000002322311000012100210120120021013004422000001010114110100100010211230200011000002300100200200022002101303451130200000002102332002102300421303220010100110023223101200210250000000001010000000013012110101200023034232021002000000320301000211212310110242203211000003102121022103312444
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKTVRESTTLYNFLGSHNPYWRLTESSDVLRFSTTETTEPDRTLQLSAEQAARIREMTVITSSLMMSLTVDESDLSVHLVGRKINKREWAGNASAWHDTPAVARDLSHGLSFAEQVVSEAHSAIVILDSRGNIQRFNRLCEDYTGLKEHDVIGQSVFKLFMSRREAAASRRNNRVFFRSGNAYEVELWIPTCKGQRLFLFRNKFVHSGSGKNEIFLICSGTDITEERRAQERLRILANTDSITGLPNRNAMQDLIDHAINHADNNKVGVVYLDLDNFKKVNDAYGHLFGDQLLRDVSLAILSCLEHDQVLARPGGDEFLVLASNTSQSALEAMASRILTRLRLPFRIGLIEVYTSCSVGIALSPEHGSDSTAIIRHADTAMYTAKEGGRGQFCVFTPEMNQRVFEYLWLDTNLRKALENDQLVIHYQPKITWRGEVRSLEALVRWQSPERGLIPPLDFISYAEESGLIVPLGRWVILDVVRQVAKWRDKGINLRVAVNISARQLADQTIFTALKQVLQELNFEYCPIDVELTESCLIENDELALSVIQQFSQLGAQVHLDDFGTGYSSLSQLARFPIDAIKLDQVFVRDIHKQPVSQSLVRAIVAVAQALNLQVIAEGVESAKEDAFLTKNGINERQGFLFAKPMPAVAFERWYKRYLKRA
1	MUSTER	3pjwA	0.233	0.629	3.109	threading_1	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AALFQEQAERSEKLRTESYQDNLTGLANRRYFEMQLNARVSNPEQASGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECETQNLVTRIRGGEFAVLAPGMTREEALQLAQSLDSALSSLYATGATDVAAVASIGLAPFA-HGDSPQAVLSLGDQALAQAEGQGEQNWACLDGDD------HHAWHRLLDQALNQRRFELFFQPVVAAQDLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGH-----EESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLP-EQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPWG-------------
2	SPARKS	3n3ta	0.406	0.380	4.949	threading_2	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERLTLDTRLRQALERNELVLHYQPIVELSGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLVT--DEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQGNL-STPQAADAFASLLDRQKAS-
3	PROSPECT2	3pjwA	0.233	0.629	4.508	threading_3	A---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ALFQEQAERSEKLRTESYQDNLTGLANRRYFEMQLNARVSNPEQASGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECAKQNLVTRIRGGEFAVLAPGMTREEALQLAQSLDSALSSLYATGATDVAAVASIGLAPFA-HGDSPQAVLSLGDQALAQAEGQGEQNWACLDGDD------HHAWHRLLDQALNQRRFELFFQPVVAAQQLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGH-----EESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLPEQ-AVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPW-------------G
4	PPA-I	3pjwA	0.233	0.629	6.837	threading_4	---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AALFQEQAERSEKLRTESYQDNLTGLANRRYFEMQLNARVSNPEQSSGYLLLLRVKDLAGLNQRLGGQRTDELLKAVGEQLSRECETQNLVTRIRGGEFAVLAPGMTREEALQLAQSLDSALSSLYATGATDVAAVASIGLAPFA-HGDSPQAVLSLGDQALAQAEGQGEQNWACLDGDD------HHAWHRLLDQALNQRRFELFFQPVVAAQQLVLHYKVLSRLLDEQGQTIPAGRFLPWLERFGWTARLDRLMLERVLEQMAGH-----EESLALNLSSATLADPQALNKVFEILRAHSNLGARLTLEIGEEQLP-EQAVLEQLTRRLRELGFSLSLQRFGGRFSMIGNLARLGLAYLKIDGSYIRAIDQESDKRLFIEAIQRAAHSIDLPLIAERVETEGELSVIREMGLYGVQGQLFGEPKPWG-------------
5	HHPRED-l	3hvb_A	0.244	0.378	5.495	threading_5	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAQRGDVIAILQQALETNSFRLLFQPVISLGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQV-ENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDF-S-------
6	HHPRED-g	3hvb_A	0.244	0.378	4.351	threading_6	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAQRGDVIAILQQALETNSFRLLFQPVISLGDSHENYEVLLRLLNPQGQEVPPAEFLHAAKEAGLAEKIDRWVILNSIKLLAEHRAKGHQTKLFVHLSSASLQDPGLLPWLGVALKAARLPPESLVFQISEADATSYLKQAKQLTQGLATLHCQAAISQFGCSLNPFNALKHLTVQFIKIDGSFVQDLNQV-ENQEILKGLIAELHEQQKLSIVPFVESASVLATLWQAGATYIQGYYLQGPSQAMDYDFS--------
7	SP3	3gfxa	0.240	0.567	5.191	threading_7	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLTTLIYRSQVH---------------------PDR----------PPVDLDALVHRASSKNLPLGITGILLFNGLQFFQVLEGT-EEALESLFSEIQS---DPRHRDVVELMRDRILDLRLFETDGALEEILRFSTDRMFRLLSAFIADGGRYCLPEPLQPSRWMMMPATAAPQHLPGQPCQFALQAIVEPKKRVSSFEALIRS--PTGG-SPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPLG----KHQLAINLLPGSYHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICW----PVA
8	SAM-T99	3ii8B	0.409	0.374	5.844	threading_8	--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ERLTLDTRLRQALERNELVLHYQPIVELSGRIVGGEALVRWEDPERGLV-PSAFIPAAEDTGLIVALSDWVLEACCTQLRAWQQQGRDLTLSVNISTRQFEGEHLTRAVDRALARSGLRPDCLELEITENVLV--TDEVRTCLDALRARGVRLALDDFGTGYSSLSYLSQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLG-EVVAEGIETAQQYAFLRDRGCEFGQG-NLSTPQAADAFASLLDR-----
9	MUSTER	3gg1B	0.244	0.564	2.038	threading_9	------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLTTLIYRSQVHPDLDALVHRASSGITGILLFNGLQFFQVESLFSEIQSDPRHRDVVELMRDYSAYR----RFHGTGMRILDLRLFET--DGALEEILR-------------------------FSTFGVTEPVNDRMFRLLSAFIADGGRYCLPEP------LQPSRWMMMAPQHLPGQPCQFALQAIVEPKKRVSSFEALIRS--PTGG-SPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPLG----KHQLAINLLPGSLYHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICW---VAR-
10	SPARKS	3gfxa	0.237	0.567	4.747	threading_10	-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLTTLIYRSQVHPDRPPVDLDALVHRASSKNLP--LGITGILLFNGLQFFQVLEG-TEEALESLFSEIQS---DPRHRDVVELMRDRILDLRLFETDGALEEILRFSTDRMFRLLSAFIADGGRYCLPEPLQPSRWMMMPATAAPQHLPGQPCQFALQAIVEPKKRVSSFEALIRSPT---GGSPVEMFAAIAAEDRYRFDLESKAYAFALAGQLPLG----KHQLAINLLPGSLHHPDAVGWLMDSLLAAGLRPDQVLIEVTETEVITCFDQFRKVLKALRVAGMKLAIDDFGAGYSGLSLLTRFQPDKIKVDAELVRDIHISGTKQAIVASVVRCCEDLGITVVAEGVETLEEWCWLQSVGIRLFQGFLFSRPCLNGIGEICWPVA----

Predicted Tertiary Structure


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TM-score=0.541 to 2basA SCOP code=c.1.33.1	TM-score=0.540 to 2basA SCOP code=c.1.33.1	TM-score=0.560 to 2basA SCOP code=c.1.33.1	TM-score=0.508 to 2basA SCOP code=c.1.33.1	TM-score=0.540 to 2basA SCOP code=c.1.33.1