Template-based Modeling Results for NTRB_ECOLI

Submitted Primary Sequence

>Length 349
MATGTQPDAGQILNSLINSILLIDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDGMILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIRK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MATGTQPDAGQILNSLINSILLIDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDGMILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIRK
CCHHHHHHHHHHHHCCCCEEEEECCCCCEEEECHHHHHHHCCCHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEEEECCCEEEEEEEEEECCCCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEECHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCEEEECHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEEECCCCCCCCCEEEEEEEECCCCCCHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEEECCCEEEEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MATGTQPDAGQILNSLINSILLIDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDGMILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIRK
4532013101200310110000003310000002000300212132012120220022122112102201332321111102012323200010000213311000000113212311221122211100310020001202000000100010024213332123003101210210230022002122322412110220022002001230333020012023200201001310010000002000311143202010101101212232343420000100111110133003200201010332021000000210024120201010232201010101146
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MATGTQPDAGQILNSLINSILLIDDNLAIHYANPAAQQLLAQSSRKLFGTPLPELLSYFSLNIELMQESLEAGQGFTDNEVTLVIDGRSHILSVTAQRMPDGMILLEMAPMDNQRRLSQEQLQHAQQVAARDLVRGLAHEIKNPLGGLRGAAQLLSKALPDPSLLEYTKVIIEQADRLRNLVDRLLGPQLPGTRVTESIHKVAERVVTLVSMELPDNVRLIRDYDPSLPELAHDPDQIEQVLLNIVRNALQALGPEGGEIILRTRTAFQLTLHGERYRLAARIDVEDNGPGIPPHLQDTLFYPMVSGREGGTGLGLSIARNLIDQHSGKIEFTSWPGHTEFSVYLPIRK
1	MUSTER	3a0rA	0.233	0.923	2.715	threading_1	-------FSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKD-LPDFEEIGSVAESVFENKEPVFLNFY--KFGERYFNIRFSPFRNAKTGVIITIDDVTELYKYEEERKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPTLKKYINIITNELSRLETIVKEILEYSKERVFTEFNLNELIREVYVLFEEKIRKNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEAT-GENGKIKITSEDMY----------TKVRVSVWNSGPPIPEELKEKIFSPFFTT------LGLSICRKIIEDEGGKIWTENRENGVVFIFEIPKTP
2	SPARKS	3a0ra	0.239	0.923	5.722	threading_2	-------FSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKD-LPDFEEIGSVAESVFENKEPVFLNFY--KFGERYFNIRFSPFRNAKTGVIITIDDVTELYKYEEERKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPELKKYINIITNELSRLETIVKEILEYSKERVFTEFNLNELIREVYVLFEEKIRKNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEAT-GENGKIKITSEDM----------YTKVRVSVWNSGPPIPEELKEKIFSPFF------TTLGLSICRKIIEDHGGKIWTENRENGVVFIFEIPKTP
3	PROSPECT2	3a0rA	0.236	0.923	4.138	threading_3	FSE-------SILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKD-LPDFEEIGSVAESVFENKEPV--FLNFYKFGERYFNIRFSPFRNAKTGVIITIDDVTELYKYEEERKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPELKKYINIITNELSRLETIVKEILEYSKERVFTEFNLNELIREVYVLFEEKIRMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEAT-GENGKIKITSEDM----------YTKVRVSVWNSGPPIPEELKEKIFSPFF------TTLGLSICRKIIEDHGGKIWTENRENGVVFIFEIPKKR
4	PPA-I	3a0rA	0.227	0.923	5.180	threading_4	-------FSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKD-LPDFEEIGSVAESVFENKEPVFLNFY--KFGERYFNIRFSPFRNAKTGVIITIDDVTELYKYEEERKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDPETLKKYINIITNELSRLETIVKEILEYSKERVFTEFNLNELIREVYVLFEEKIRKNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEAT-GENGKIKITSEDMY----------TKVRVSVWNSGPPIPEELKEKIFSPFFTT------LGLSICRKIIEDEGGKIWTENRENGVVFIFEIPKTP
5	HHPRED-l	2c2a_A	0.272	0.642	4.083	threading_5	-----------------------------------------------------------------------------------------------------------MENVTESKELER-LKRID--RMKTEFIANISHELRTPLTAIKAYAETIYNSLDLSTLKEFLEVIIDQSNHLENLLNELLDFSRLINREKVDLCDLVESAVNAIKEFASHNVNVLFESNVPCPEAYIDPTRIRQVLLNLLNNGVKYSKKDAPYVKVILD----------EKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRV----TGLGLAITKEIVELHGGRIWVESEVGGSRFFVWIPKD-
6	HHPRED-g	2c2a_A	0.271	0.645	3.066	threading_6	-----------------------------------------------------------------------------------------------------------MENVTESKELER-LKRIDRMKT--EFIANISHELRTPLTAIKAYAETIYNSLDLSTLKEFLEVIIDQSNHLENLLNELLDFSRQINREKVDLCDLVESAVNAIKEFASHNVNVLFESNVPCPEAYIDPTRIRQVLLNLLNNGVKYS-KKDAYVKVILD----------EKDGGVLIIVEDNGIGIPDHAKDRIFEQFYRVD---TGLGLAITKEIVELHGGRIWVESEVGGSRFFVWIPKDR
7	SP3	3a0ra	0.228	0.917	5.382	threading_7	-------FSESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEE-IGSVAESVFENKEPV----FLNFYKFGERYFNIRFSPFRNAGVIITIDDVTELYKYEEERKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPTLKKYINIITNELSRLETIVKEILEYSKERVFTEFNLNELIREVYVLFEEKIRKNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEAT-GENGKIKITSEDM----------YTKVRVSVWNSGPPIPEELKEKIFSPFF------TTLGLSICRKIIEDHGGKIWTENRENGVVFIFEIPKTP
8	SAM-T99	3a0rA	0.232	0.903	5.795	threading_8	---------ESILESLETAIITLSKDGRITEWNKKAEQLFGLKKENVLGRRLKDLPDFEEIGSVA-----ESVFENKEPVFLNFYKFGERYFNIRFSPFRNAGVIITIDDVTELYKYEEERKRRERLSILGEMTARVAHEIRNPITIIGGFIMRMKKHLDDPELKKYINIITNELSRLETIVKEILEYSKELEFTEFNLNELIREVYVLFEEKIRMNIDFCFETDNEDLRVEADRTRIKQVLINLVQNAIEAT-GENGKIKITSEDMYT----------KVRVSVWNSGPPIPEELKEKIFSPFFTT------LGLSICRKIIDEHGGKIWTENRENGVVFIFEIP---
9	MUSTER	3d36B	0.265	0.616	2.121	threading_9	-------------------------------------------------------------------------------------------------------------------------GPHMVIRAEKHLAASISHEIRNPLTAARGFIQLIEEQLAADKRRQYARIAIEELDRAEAIITDYLTFAKPATPEKLNVKLEIERVIDILRPLANMCVDIQATLAP--FSVIGEREKFRQCLLNVMKNAIEAM-PNGGTLQVYVSIDN----------GRVLIRIADTGVGMTKEQLERLGEPYFTTKGKGTGLGMMVVYRIIESMNGTIRIESEIHGTTVSIYLPLAS
10	SPARKS	3d36a	0.256	0.605	3.833	threading_10	-----------------------------------------------------------------------------------------------------------------------------GPHMVIRLAASISHEIRNPLTAARGFIQLIEEQPLADKRRQYARIAIEELDRAEAIITDYLTFAKPETPEKLNVKLEIERVIDILRPLANMCVDIQATLAP--FSVIGEREKFRQCLLNVMKNAIEAM-PNGGTLQVYVSID----------NGRVLIRIADTGVGMTKEQLERLGEPYFTTKGKGTGLGMMVVYRIIESMNGTIRIESEIHGTTVSIYLPLAS

Predicted Tertiary Structure


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TM-score=0.597 to 1ys3B SCOP code=d.122.1.3	TM-score=0.599 to 1ys3B SCOP code=d.122.1.3	TM-score=0.595 to 1ys3B SCOP code=d.122.1.3	TM-score=0.601 to 1ys3B SCOP code=d.122.1.3	TM-score=0.599 to 1ys3B SCOP code=d.122.1.3