Template-based Modeling Results for GFCD_ECOLI

Submitted Primary Sequence

>Length 698
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEPLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDACWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEPLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDACWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ
CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEEEEECCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEECEEEEEEEECCCCCCCEEEEEEEECCCCCCCCCCEEEEEEEEECCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCCCEEECCCCCCEEEEEEECCCCCCHHCCCCCCCCCCCEEEEEEECCCCCEEEEEEECCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEECCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCEEEEEECHHHHHHHHCCCCCCCCCHHHCCEECCCCCCCCCCCEECCCCCCEEEEEEEEEECCCCCCCCEEEEEEEEEEEEEEECCCEEEEEEEEEEHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCEEEEEECCCCCEEEEEEEEEEEEECCCCCCCCCCCCCEEEEEEEEEECCCCCCEEEEEEEEEECCCCEEEEEEEEEEECCCEEEEEEEEECCCCHHHCCCCCCCCCEEEEEECHHCEECCCCCEEEEEEEECCHHHHHCCCCCCCHHHHHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEPLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDACWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ
54220011000000000002122221222111121121010001001031133020000011123010000000002101000100002223213233122321120100001010043222001000001112110113010000011001110100000000011111211103112311222322321301021012010111100111221220102010113322331213133213000000010132010100011122000000010112323122332232222222323213121002101102231201001011223201010121312213200120010003201420210000224332101101020200221121221132221222212233222223112133320100000000111113321000100000001010031000100000001211231312122131212312120210142212020010000020131010000000012111000010001023010000010000211123221312222100000000010221300002010010024110010100110131000000001131233212322123000000002001022332101000000021013202241101200233223334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKNSYLLSCLAIAVSSACHAEVLTYPDPLGSSQSDFGGTGLLQMPNARIAPEGEFSVNYRDNDQYRFYSTSVALFPWLEGTIRYTDVRTRKYSQWEDFSGDQSYKDKSFDFKLRLWEEGYWLPQVAFGKRDIAGTGLFDGEYLVASKQAGPFDFTLGMAWGYAGNAGNITNPFCRVSDKYCHRAESHDAGDISFSDIFRGPASIFGGIEYQTPWNPLRLKLEYDGNNYQNDFAGKLPQASHFNVGAVYRAASWADLNLSYERGNTLMFGFTLRTNFNDLRPALRDTPKPAYQPAPESEGLQYTTVANQLTALKYNAGFDAPEIQLRDKTLYMSGQQYKYRDSREAVDRANRILVNNLPQGVEKISVTQKREHMAMVTTETDVASLRKQLAGTAPGQSEPLQQQRVEAEDLSAFGRGYRIREDRFSYSFNPTLSQSLGGPEDFYMFQLGLMSSARYWFTDHLLLDGGIFTNIYNNYDKFKSSLLPADSTLPRVRTHIRDYVRNDVYLNNLQANYFADLGNGFYGQVYGGYLETMYAGVGSELLYRPLDACWALGVDVNYVKQRDWDNMMRFTDYSTPTGFVTAYWNPPTLNGVLMKLSVGQYLAKDKGATIDVAKRFDSGVAVGVWAAISNVSKDDYGEGGFSKGFYISIPFDLMTIGPNRNRAVVSWTPLTRDGGQMLSRKYQLYPMTAEREVPVGQ
1	MUSTER	3ddrA	0.132	0.956	1.129	threading_1	EPRSVSVISREQMDNRPARHAADILEQTTSSVSQQDPALSGIQDYGRVNMNIDG-MRQNFQKSGHGQRNGTMY-IDSEL---LSGVTI---DKGTTGGMGSAGTL---GGIATFNTVSSDFLAPGKELGGKLHASTGDNGTHFIGSGILALTGDILLAASERHLGDYWPGNK-----GDIGNIRINNDTGNYDRYAESIKNNKIPDTHVGWNLANQRLQLSYLQTAGTLTNLGTRPPYELGWKRTGYTDVMARNAAFDYSLAPVDWLDFQAKLYYVDTQDDSDTYSTSSLLDNGYATRTRLRTYGAQAQNTSRFSLAPGHDFRANYGLEFYYDKATSDSSRQGMEGVTPAGNRSVASL--ANLTYDYLTLEGGLRYDRYRLRGQTGLSYPDLAKDGQRYTIDNPCKALRLTGCSTTTEDWDVDRDQGKLSPTLAVAVRPGVEWLELYTTYGKSWRPPAITETLTNGSAHSTQYPNPFNVQQPDLWFEGDRLVADTKVDNYINLAIDRNKP--GLVQPSGGNAAYVNNLSKTRFR--GLEYQLNYDA--GVFYADLTYTHMIGKNEFCSNKAWLGGRLRYGGNFYVEPDVTCDGGTQFGSAAYLPGDRGSVTLGGRAFDRKLDAGVTVRFAPGYQDSSVPSNYPYLADWYTLFDLYASKLTDSTLRGSVENLT-------NRAYVSYGETLANTLGRGR
2	SPARKS	1by5a	0.089	0.884	0.917	threading_2	VVTAEEMALHQPKSVKEALSYTPSVGTRGASNTYDHLIIRGF-------AAEGQSQNNYLNGLKLQGNFYNDAVIDPYLERAEIMRGPVSVLYGKSSPMVSKRPTTEPLKEVQFKAGTDSLFQTGFDFSDS-LDDDGVYSYRLTGLARSANAQKGSEEQRYAIAPAFTWRPDDKTNFTFLSYFQNEPETGYYGWLPKEGTVEPLPNGK---RLPTD----------FNEGAKNNTYSRNEKMVGYSFDHEFNDTFTVRQNLRFAEKTSQNSVYGYGVCSDPANAYSKQCAALAPADKGHYLARKYVVDDEKLQNFSVDTQLQSKFATGDIDHTLLTGVDFMRMR-----------------NDINAWFGYDDSVPLLNLYNPVNTDFDFNAKDPANSGPYRILNKQKQTGVYQWDKVLVTLGGRYDWADQESLNRVAGTTDKRDDKQFTWRGGVNYLFDNGVTPYFSYSESF-----EPSSQVGKDGNIFAPSKGKQYEYVPEDRPI-VVTGAVYNLDPEGSFFSVEGGEIRAR--GVEIEAKRPLSA-SVNVVGSYTYTDAETTYKGNTPAQVPKHMASLWADYTFFDGPL--------------------------SGLTLGTGGRYTGSSYGDPANSFKVGSVDALVRYDLARVGMAGSNVALHVNNLF-------DREY-VASCFNTYGCFWGA
3	PROSPECT2	3a0fA	0.067	0.898	2.361	threading_3	-------------------------------AELKPVTISG-----------GGFISGLVAHPTEKDLIYARTDIGGTYRWNAAKWEWEPITDFIINNALAGNGANLLGTES---IALDPHNPDRLYLAQGDYVQWDPWAAFLVSVPMGANDMGRNGGERLAVNPHWTDELWFGSRTQGLWRSTDRAQTWSRMNQLPDSSTYGIGIISVIFDPKNVGTAYVASHAVGGIVAASGTAIQSSGPLPIKIALGKNGRLYITYSDAPGGVLYGEVWSYDPTNGNWKHITPSREGANTYPAPTGNKK-------------VVPGGWNGISVGNGDTVVVSTLDANGEDSKDLGKLTTPWLSFQNRGSGIVGILLDPFSDRLLIWATDAVSRADSNQAPSNTEGIEETAILVLKSPPAGPAHLFSGMYDLG------GMRHDDFSVPQPMYSKPTFSSTDGLDFAGRAANVLARVGRNDHPDAGVAGCTQLFQTCVPSLEVGNGGTIAVGADGKTFVWSPSKADGKGPYTSSDYGAPSGLSKQTTGIAADRVQANTFYVYVEGDFFVSTDGGKSYGNGLPCCWTYTGTPVTSNLRAGELWVSVKGVGYHSTDFGNTFTALAGSGSSLNPAVFSIGAPQTPNATESASQPEGLYMSTDNTRLNDDAHNYGGATVISGDP-------RIYGRVYIGMNGRGAQALG
4	PPA-I	3v4pA	0.079	0.794	1.352	threading_4	------------------YNVDTESALLYQGPHNTLFGYSLLVGAPTANWLANA------SVINPGAIYRCRIGKNPG----QTCEQLQLGSPNGEPCGKTCLEERDNQLGVTLSRQPGENGSIVTCGHRWKNIFYIKNENKLPTGGCYGVPPDLRTELSKRIAPCYQDYVKKFGENFASCQAGISSFYTKDLIVMGAPGSSYWTGSLFVYNITTNKYKAFLDKQNQVKFGSYLGHFRSQHTTEVVGGAPQHEQIGKAYIFSIDEKELNILHEMKGKKLGSYFGAS----VCAVDLNADGFSDLLVGAPMQSTIREEGRVFVYINSGSGAVMNAMETNLVGS-------------DKYAARFGESIVNLDNDGFEDVAIGAP------QEDDLQGAIYIYNGRADGISSTFSQRIEGLQISKSLSMFGQSISGQIDADNNGYVDVAVGAFRSDSAVLLRTRPVVIVDASLSHPESVNRTKFDCVENGWPSV-------------CIDLTLCFSYKGKEVPGYIVLFYNMSLDVNRKAESPPRFYFSSNGTSDVITGSIQVSS-----------REANCRTHQAFMRKDVRD-------------------------ILTPIQIEAAYHLGPHSTEEFPPKKEKDIMKKTINFAR--------------------------------------------
5	HHPRED-l	3nb3_A	0.149	0.192	1.241	threading_5	-----------------------AP-------KDNTYTGLGWSQ----------------HENKLGAGAFGGYQVNPYVGFEMGYDWLGRMPY--------AYKAQGVQLTAKLGYPITDDLDI-------------------------------YTRLGGMVWRADTYSNVY-G---------KNHDTGVS----------PVFAGGVEYAI-TPEIATRLEYQWTN------------GMLSLGVSYRFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	3nb3_A	0.147	0.195	1.431	threading_6	-----------------------APK----D--NTWYTGAKLWSQ---------------HENKLGAGAFGGYQVNPYVGFEMGYDWLGRMPY--------AYKAQGVQLTAKLGYPITDD-------------------------------LDIYTRLGGMVWRADTYSNVY---------G-KNHDTGVSP----------VFAGGVEYAIT-PEIATRLEYQWTN------------GMLSLGVSYRFG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	3csla	0.121	0.937	0.711	threading_7	IQDYGRVNMNINFQKSGHGQRNGTMYIDSEGTTGGMGSAGGIATFASDFLAPGGKLHASTGDNGTHFIGSGILALGETGDILLAASERHLGDYWPGNKGDIGN--------IRINNDTGNYDRYAESIKNNKIPDTHYRMHSRLAKVGWNLPANQRLQLSYLQTQTASPIAGTLTNLGTRPPYELGWKRTGYTDVMARNAAFDYSLAP--EDVDWLDFQAKLYYVDTQDDSDTYSTSSLLDNGYATRTRLRTYGAQAQNTSRFGHDFRANYGLEFYYDKATSDSSRQGMEGVTPA-----GNRSVASLFANLTYDYDGWLTLEGGLR--YDRYRLRGQTGLSYPDLAKDGQRYTIDNPCKALRLTGCSTTTREDWDVDRDQGKLSPTLAVAVRPGVEWLELYTTYGKSWRPPAITETLTNGSAHSSSTQYP--NPFL-QPERSRAWEVGFNVQQPDLWFEGLVAKVAYFDTKVDNYINLAIDRNKPGLVQPSIGNAAYVNNLSKTRFRGLEYQLNYDAG-VFYADLTYTHMIGKNEFCSN-KAWLGGRLRYGDGSRRGNFYVEPDAASNDFVTCDGGTQFGSAAYLPGD----RGSVTLGGRAFDRK---------LDAGVTVRFAPGYQDSSVPSNYPYLADWPKYTLFDLYA-SYKLTDSTLRGSVENL-------TNRAYVVS-YGETLANTLGR
8	SAM-T99	3f7aB	0.124	0.371	0.560	threading_8	------------VSATLLIIDDDEVVRE----SLAAY--------------------------------------------------LED--------------------------------------------------------------------------------------------------------------------------------------------------------SNFKVLQALNGLQGLQIF-----------------------ESEQPDVICDLRPQIDGLELLGAADYLIKPLEDLAVLEHSVRRALDRAYLRVENQRYRDKLEAANRELQASLNLLQEDQDYFRVDERRVAFYLADVSGHGASSAFVTVLLKFTTRLLYESRRFKPSEVLAHINRGLINTKLGKVTLGGVIDLEKNS----LTYSIGGHLPLPVLFVEGQAGYLEGRVGLFDDAT------YDDRVELPP------------------------------------------------------------------------------------------------------------------------------------------SFSLSLFSDGILDVGATL--------------------------------------------------
9	MUSTER	2cn2A	0.111	0.903	1.077	threading_9	-------------------VTSVPYKWDNVVIG-GGGGFPGIVFNETEKRADIGGAYRWDPSTETWIPLLDHFQEYSYYGVESIATDPVDPNGYTNDWLPNGAILR-EKTILPFKGGNPGRSGERLAIDPND-------NRILYLGTRCGNGLWRS-GVTWSKV---ESFPNPGTIIGVVWVVFDKSSSTPGNPTKTIYVGVADKNESIYRSTD----------GGVTWKA-----VPGQPKGLLPHHGVLASNG-LYITYGDGKGQVWKFNTWIDITPIPYSSSDNRFCFAGLAVDRQNPDIAWWPDEYIFRSTDGGWKNIWEWGYPERILHYEIDISAAPWLDWGTEKQLPEINPKLGWIGDIEIDPFNSDRYVTGATIYGDNLTDWDRGGKVKIEVKAT----GIEECAVLDLVSPPEGAPLVSAVVGFVHDDLKVGPKKHVPSYSSGTGIDYELVPNFALVAKAVKKISFSYDGGRNWFQPPNEAPNS--VGGGSVAVAADAKSVIWTPE-----ASPAVTTDNGNSWKVCTNLGGAVVASRVNGKFYAFYNGKFYISTDGGLTFTDTKAPQLPKSVNKIKAVPGKEGHVWLAAGGLWRSTDGGYT---FEKLSNVDTAHVVGFGKAAPGQDYGKIDNVLGFFRSD--TWVRINDDEHGYGAVDTAITGDP----RVYGRVYIATNGRGIVYGE
10	SPARKS	3csla	0.106	0.931	0.914	threading_10	IQDYGRVNMNIGMRQNFQKSGHGQRNGTMYGTTGGMGSAGGIATFASDFLAPGKELGGKLHAGTHFIGSGILALGNETGDILLAASERHLGDYWPGNKGDIGNIRINND--------TGNYDRYAESIKNNKIPDTHYRMHSRLAKVGWNLPANQRLQLSYLQTQTASPIAGTLTNLGTRPPYELGWKRTGYTDVMARNAAFDYSLAP--EDVDWLDFQAKLYYVDTQDDSDYSTSSLLDNGYATRTRLRTYGQNTSRFSLAPGHDFRANYGLEFYYDKATSDSSRQGMEGVTPAGNR-----SVASLFANLTYDYDGWLTLEGGLR--YDRYRLRGQTGLSYPDLAKDGQRYTIDNPCKALRLTGCSTTTREDWDVDRDQGKLSPTLAVAVRPGVEWLELYTTYGKSWRPPAITETLTNGSAHSS---STQYPNPFLQPERSRAWEVGFNVQQPDLWFEGLVAKVAYFDTKVDNYINLAIDRNKPGLVQPSIGNAAYVNNLSKTRFRGLEYQLNYDAG-VFYADLTYTHMIGKNEFCSN----KAWLGG--------RLRYGDGSRRGNFYVEPDAASNDFVTCDGGTQFGSAA------YLPGDRGSVTLGGRAFDRKLDAGVTVRFAPGYQDSSVPSNYPYLADWP--------KYTLFDLYASYK-LTDSSVENLTNRAYVVSYGETLANTLGR

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.659 to 2gskA SCOP code=f.4.3.3	TM-score=0.563 to 1fepA SCOP code=f.4.3.3	TM-score=0.812 to 1fi1A SCOP code=f.4.3.3	TM-score=0.784 to 2ebsB SCOP code=b.69.13.1	TM-score=0.567 to 1jofA SCOP code=b.69.10.1