Template-based Modeling Results for GCVA_ECOLI

Submitted Primary Sequence

>Length 305
MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFRFRYEQ
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFRFRYEQ
CCCCCCCCHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHEEECCCCEEECHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCEEEEECCCCCCCCEEEECCCCCEEEEECHHHHHHCCCCCCHHHHHCCCEECCCCHHHHHHHHHHCCCCCCCCCCCCEECCHHHHHHHHHHCCCEEEECHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFRFRYEQ
55541011100000100132100220032010021001200320042011300212221010032022002102300220130023023332310010000000011000000120123111010000011223222133000000003121210101201222000000010042232231031014010011112210120043021321313300101200000100130100000100001110420200110332022320000001323232210000030013101222331323234
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKRLPPLNALRVFDAAARHLSFTRAAEELFVTQAAVSHQIKSLEDFLGLKLFRRRNRSLLLTEEGQSYFLDIKEIFSQLTEATRKLQARSAKGALTVSLLPSFAIHWLVPRLSSFNSAYPGIDVRIQAVDRQEDKLADDVDVAIFYGRGNWPGLRVEKLYAEYLLPVCSPLLLTGEKPLKTPEDLAKHTLLHDASRRDWQTYTRQLGLNHINVQQGPIFSHSAMVLQAAIHGQGVALANNVMAQSEIEAGRLVCPFNDVLVSKNAFYLVCHDSQAELGKIAAFRQWILAKAAAEQEKFRFRYEQ
1	MUSTER	3ispA	0.226	0.941	2.562	threading_1	L-----DGPQLAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVR-EKPCRATTAGIPLLRLAAQTALLESEALAEMGASLKRTRITIAVNADSMATWFSAVFDGLGDVLL--DVRIEDQDHSARLLREGAMGAVTTERNPVPGCRVHPLGEMRYLPVASRPFVQRHSDGFTAAAAAKAPSLAWNRDDGLQDMLVRKAFRRAITRPTHFVPTTEGFTAAARAGLGWGMFPEKLAASPLADGSFVRVCDIHLD----VPLYWQCWKLDSPIIARITDTVRAAASGL-----YRGQ-
2	SPARKS	3kosa	0.295	0.633	4.470	threading_2	--------------------------------------------------------------------------------------------QEKLKIGVVGTFAIGCLFPLLSDFKRSYPHIDLHISTHNNRVDPAAEGLDYTIRYGGGAWHDTDAQYLCSA-LSPLCSPTLA---SQIQTPADILKFPLLRSYRRDEWALWQTV-GEAPPSPTHNVVFDSSVT-LEAAQAG-GVAIAP-VRFTHLLSSERIVQPFLTQIDLG-SYWITRLQSRPETP-AREFSRWLTGVLHKT----------
3	PROSPECT2	3szpA	0.226	0.944	3.170	threading_3	MK-----LDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGARIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRVGPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQLTNSQGETVVNSDRGRFQASALNVVRSACSEGLGITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIG------------YHL
4	PPA-I	3ispA	0.204	0.948	6.003	threading_4	----QLDGPQLAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVR-EKPCRATTAGIPLLRLAAQTALLESEALAEMGASLKRTRITIAVNADSMATWFSAVFDGLGDVLLDVRIEDQDHSARL-LREGVAMGAVTTERNPVPGCRVHPLGEMRYLPVASRPFVQRHSDGFTAAAAAKAPSLAWNRDDGLQDMLVRKAFRRAITRPTHFVPTTEGFTAAARAGLGWGMFPEKLAASPLADGSFVRVCDIHLD----VPLYWQCWKLDSPIIARITDTVRAAASGLYRGQ------
5	HHPRED-l	3hhg_A	0.246	0.948	3.390	threading_5	---K-TNSEELTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLAVIPQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWALDAQGNPYKISPHFTASSGEILRSLCLSGCGIVCLSDFLVDNDIAEGKLIPLLEQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEELG------------
6	HHPRED-g	3szp_A	0.233	0.941	2.858	threading_6	-----MKLDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDRGASGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRVGPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQLT-NSQGETVVNSDGRFQASALNVVRSACSEGLGITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIGYHL------------
7	SP3	3ispa	0.233	0.944	4.693	threading_7	---QL-DGPQLAALAAVVELGSFDAAAERLHVTPSAVSQRIKSLEQQVGQVLVVR-EKPCRATTAGIPLLRLAAQTALLESEALAEMGASLKRTRITIAVNADSMATWFSAVFDGLGDVLL--DVRIEDQDHSARLLREGVMGAVTTERNPVPGCRVHPLGEMRYLPVASRPFVQRHSDGFTAAAAAKAPSLAWNRDDGLQDMLVRKAFRRAITRPTHFVPTTEGFTAAARAGLGWGMFPEKLAASPLADGSFVRVCDIHLD----VPLYWQCWKLDSPIIARITDTVRAAASG-----LYRGQ-
8	SAM-T99	3hhgE	0.245	0.925	4.300	threading_8	----------LTVFVQVVESGSFSRAAEQLAMANSAVSRIVKRLEEKLGVNLLNRTTRQLSLTEEGAQYFRRAQRILQEMAAAETEMLHEIPQGVLSVDSAMPMVLHLLAPLAAKFNERYPHIRLSLVSSEGYINLIERKVDIALRAGELDDSGLRARHLFDSRFRVIASPEYLAKHGTPQSTEELAGHQCLGFTEPGSLNTWAVLDAQGPYKISPHFTASSGEILRSLCLSGCGIVCLSDFLVDNDIAEGKLIPLLAQTSDKTHPFNAVYYSDKAVNLRLRVFLDFLVEEL-------------
9	MUSTER	3szpA	0.232	0.931	2.239	threading_9	MK-----LDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRSGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRVGPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQ-LTNSQGETVNSDRGRFQASALNVVRSACSEGLGITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIG---------------
10	SPARKS	3szpa	0.237	0.941	4.458	threading_10	MK-----LDDLNLFRLVVENGSYTSTSKKTMIPVATITRRIQALEDSLNLRLLNRHARKLTLTEAGERFYKDCSPLLERLASMTEEITDECRGGRIRISAPSNLTKRMMMPMFNAFMEKYPDIHIELMMSNQADDLDPTEWDVIFRVGPQRDSSLIARKIGEVKDILVASPQYLSSHPQPTHAEELHQHQLLKGYPLLKWQ-LTNSQGETVVNSDRGRQASALNVVRSACSEGLGITLMPDVMLREFLEDGSLVQVLSDWSSNPRDIYMLYNHKDHQPEKVRLFIDFVIGYHL------------

Predicted Tertiary Structure


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TM-score=0.639 to 2esnC SCOP code=a.4.5.37	TM-score=0.645 to 2esnC SCOP code=a.4.5.37	TM-score=0.615 to 1amfA SCOP code=c.94.1.1	TM-score=0.640 to 2esnC SCOP code=a.4.5.37	TM-score=0.638 to 2esnC SCOP code=a.4.5.37