Template-based Modeling Results for GARD_ECOLI

Submitted Primary Sequence

>Length 523
MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLTGTDDVQAIPVESASIVSLQDEKHVGFQSMVEDILQIAERHLQKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAVNEEVGKRLLEEMEWYDNYLNMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEETIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVT
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLTGTDDVQAIPVESASIVSLQDEKHVGFQSMVEDILQIAERHLQKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAVNEEVGKRLLEEMEWYDNYLNMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEETIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVT
CCCCHHHHCCCCCCEEEECCCCCEEEEECCCCCCCCCEEECCEEECCCCCCCCEEEECCCCCCCEEEECCCEEEEECCCCCCCCEEEHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCEEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHCCCCEEEECCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCEEEEECCHHHHHHCHHCCCCCCHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCEEEEEECCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLTGTDDVQAIPVESASIVSLQDEKHVGFQSMVEDILQIAERHLQKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAVNEEVGKRLLEEMEWYDNYLNMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEETIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVT
5531323332321100100321000000121214312202210201330331010002103221200201010010032034010001110222312212212112322331232321101001133031001100000000100010021003101321133122020000010110001122221010001001200201111000000010024121220120023132232321200002112321121002200200230032034333320302200000101202211101101000200100050100000120221230110002111333003201300210130022032322211020123100010022012101311411001002212412340000000110021000100001000000001210122021000000012230022123101010020021332032002200200010023333111231322110000111335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MANIEIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESMVVLPEAPPLHTLPLATKVPEPLPPLEGYTFEGYRNADGSVGTKNLLGITTSVHCVAGVVDYVVKIIERDLLPKYPNVDGVVGLNHLYGCGVAINAPAAVVPIRTIHNISLNPNFGGEVMVIGLGCEKLQPERLLTGTDDVQAIPVESASIVSLQDEKHVGFQSMVEDILQIAERHLQKLNQRQRETCPASELVVGMQCGGSDAFSGVTANPAVGYASDLLVRCGATVMFSEVTEVRDAIHLLTPRAVNEEVGKRLLEEMEWYDNYLNMGKTDRSANPSPGNKKGGLANVVEKALGSIAKSGKSAIVEVLSPGQRPTKRGLIYAATPASDFVCGTQQVASGITVQVFTTGRGTPYGLMAVPVIKMATRTELANRWFDLMDINAGTIATGEETIEEVGWKLFHFILDVASGKKKTFSDQWGLHNQLAVFNPAPVT
1	SPARKS	3laza	0.936	0.180	1.999	threading_1	AANIKIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESVVLPE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2	PROSPECT2	1iexa	0.078	0.904	1.368	threading_2	DYVLYKDATKPVEDRVALLGRMTTQIERLVATPDVLRDNFIGSLLSGGGSVP-----RKGATAKEWQDMVDGFQKACMS---------------------------------TRLGIPMIYGIDAVHGQNNVYGATIFPHNVGLGAYLVKRIGEATALEVRATGIQYAFAPCIAVCRDPSYSEDRRIVQSMTELIPGLQGDVPKDFTSGMPFVAGKNKVAACAKHFVGDGGTVDGINENNT------IINREGLMNIHMPAYKNAMDLVTGYLKDTLKFKGFVISDWEGIDRITTPAGSD--YSYSVKASILAGLDMIMVPNKYQQFISILTGHVNGGVIPMSRIDDAVTRILRVKFTMGLFENPYADPAMAEQLGKQEHRDLAREAARKSLVLLKNGKTSTDAPKKAPKILVAGSHADNLGYQC----GGWTIEWQGDTGRTTVVDPSTVVVFAENPDAEFVKSGGFSYAIVAVGEHPYTETKGGLSTVQAVCGLISGRPVVVQPLLAASDALVAAWLPGSK
3	PPA-I	3lazA	0.936	0.180	1.514	threading_3	AANIKIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESVVLPE---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4	PROSPECT2	1pieA	0.088	0.719	1.315	threading_4	TVLSALTEKGDTKEVEYFFSPGRINLIGEHTDYNGGYVFPASITI------GTTGLARLREDKKVKLYSE------------------------NFPKLGVIEFDLDEVEKKDGELW----------------------------SNYVKGMIVMLKGAGYEIDKGFELLIKGEIPTASGLSSSASLELLVGVVLDDLFNLN---------------VPRLELVQLGQKTENDYIGVNS---------GILDQFAIGFGEVKKAIELDCNTLKYEPVELRDYDIVIMNTNKPRALTESKYNERFAETREALKRMQTRLDIQSLGELSNEEFDTDLIGDETLIKRARHAVYENNRTKIAQKAFVAGN------LTKFGELLNASHASLKDDYEVT--------------------GLELDTLAETAQKQAGVLGARMTGAGFGGC------AIALVA--------------------------HDNVSAFRKAVGQVY-------EEVVGYPASFYVAQIGSKL
5	HHPRED-l	3laz_A	0.989	0.178	6.543	threading_5	-ANIKIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDES-VVLPE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	PROSPECT2	1a3wa	0.101	0.776	1.302	threading_6	ARKSEELYPGRPLAIALDTKGPEIRTGTTTNDVDYPIPPNHEMIFTTDDKYAKA-----CDDKIMYVDYKNIT----KVISAGRIIY----------------VDDGVLSFQVLEVVDTLKVKALNAGKICSHKGVNLPVDLPALSEKDKEDLRFGVKN------GVHMVFA-------SFIRTANDVLTIREVLGEQGKDVKIIVKI-------ENQQGVNNFDEILKVTD--------GVMVARGDLGIEIPAPEVLAVQKKLIAKSNLAGKP------VICATQMLESMTYNPRPTRAEVSDVGNAILDGADCVMLSGETAKGNYPINAV------TTMAETAVIAIAYLPNYDDMRNCTPKPTST------TETVAASAVAAVFEQKAKAIIVLSTSGYRPNCPIILVTRCPR---AARFSHLYRGVFPFVFEKEPVSDWTD--------------------------------------DVEARINFGIEKAKEFGIL-----KKGDTYVSIQGFKAG
7	HHPRED-g	3laz_A	0.989	0.178	5.758	threading_7	-ANIKIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDES-VVLPE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	PROSPECT2	1a49a	0.102	0.847	1.292	threading_8	IQDIDSAPITARNTGIIIKSGMNVARMTESFASDPILYRPVAVALDTKGPEIRTGLIKGSGTAEVELKKGATLKITLDNAYMEKWLDYKNICKVVDVGSKVYVDDGLISLQVKQKGPDFLVTEVENGGFLGSKKGVNLPGAAVDLPAVSEKDIQDLKFGVE---QDVDMVF-------ASFIRKAADVHEVRKILGEKGKNIKIISKI-------ENHEGVRRFDEILEASD--------GIMVARGDLGIEIPAEKVFLAQKMIIGRCNRAGKP------VICATQMLESMIKKPRPTRAEGSDVANAVLDGADCIMLSGETAKGDYPLEAVRMQ--HLIAREAEAAMFHRKLFEELARSSSHSTDLMEAMAMGSVEASYKC-----------------------LAAALIVLTESGRSAHQVAR------------------YRPRAPIIAVTRNHQTARQAHLYRGIFPVVCDPVQEAWAEDVDLRVNLAMNVG------KARGFFKKGDVVIVRVVPVP
9	SP3	3laza	0.968	0.180	2.133	threading_9	AANIKIRQETPTAFYIKVHDTDNVAIIVNDNGLKAGTRFPDGLELIEHIPQGHKVALLDIPANGEIIRYGEVIGYAVRAIPRGSWIDESVV-LPE--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	MUSTER	1uhvA	0.132	0.857	0.642	threading_10	MIKVRVPDFSDKK----FSDRWRYCVGTGRLGLALQKEYIETLYVKENIDFGHGLLCDDVGIYREDVVGDEVKPFY--NFTYIDRIFDSFLEIGIRPFVEIGFMPKKLASGTQTVFYWEGNVTPPKD--------------YEKWSDLVKAVLHHFISRYGIEEVLKWPFEIWNEPNLKEFWADEKEYFKLYKVTAKAIKEVNENLKVGGPAIGGADYWIEDFLNFCYEE-NVPVDFVSRHAYTSKQGEYTIMPSEYMLNEFKTVREIIKNSHFPNLPF--HITEYNTSYSPQNPVHDTPFNAAYIARILSEGGDSFSYWTFSDVFEE------RDVPRSQFHGGFGLVA------------LNMIPKPTFYTFKFFNAM---GEEMLYRDEHMLVTRRDDGSV-----ALIAWNEVMD-YEVEIPVRFRVFIKRQLIDEGNPWGRPRYP------SKEQVNTLREVAKP---EIMTSQPVAND-GYLNLKFKL---------------GKNAVVLYELTERI

Predicted Tertiary Structure


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TM-score=0.308 to 1opsA SCOP code=b.85.1.1	TM-score=0.805 to 1iexA SCOP code=c.1.8.7	TM-score=0.308 to 1opsA SCOP code=b.85.1.1	TM-score=0.827 to 1pieA SCOP code=d.14.1.5	TM-score=0.752 to 1a3wA SCOP code=b.58.1.1