Template-based Modeling Results for FHUD_ECOLI

Submitted Primary Sequence

>Length 296
MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA
CCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCHHHHHHHCCCCEEEEECCCCCCCCCCCHHHCCCCEECCCCCCCCHHHHHHCCCCEEEECCCCHHHHHHHHHHCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECCCEEEEEECCCCHHHHHHHCCCCCCCCCCCCCCCCEEECHHHHHHCCCCEEEEEECCCHHHHHHHHCCHHHHHCCHHHCCCEEEECCHHHCCCHHHHHHHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA
55212211112000000000001202222212221110000111001001102010000022222422122231132012012222121300140201000012122200310240130100212323220110230022003113232102210220230031013212532212000000013320000022110320022010321232323221121001210221221000001122241021023121022021122220010100001000000110021012112334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSGLPLISRRRLLTAMALSPLLWQMNTAHAAAIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIGGKA
1	MUSTER	1efdN	0.996	0.885	2.851	threading_1	-------------------------------GIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIG---
2	SPARKS	3lhsa	0.213	0.936	4.473	threading_2	----------------ASTISVKDENGTVKVPKDAKRIVVLEYSFADALAALDVKPVGIADDGKKKRIIKPREKIGDYTSVGTRKQPNLEEISKLKPDLIIADSRHKGINKELNKIAPTLSLKSFDGD--YKQNINSFKTIAKALNKEKEGEKRLAEHDKLINKYKDEIKFDRNQK-VLPAVVAKAGLLAHPNYSYVGQFLNELGFKNALSDDVTKGPYLQLDTEHLADLNPERMIIMTDHDSAEFKKLQEDATWKKLNAVKNNRVDIVDRVWARRGLISSEEMAKELVELSKKEQ
3	PROSPECT2	1efdn	0.992	0.885	3.936	threading_3	-------------------------------GIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAI---G
4	PPA-I	1efdN	0.996	0.885	3.542	threading_4	-------------------------------GIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIG---
5	HHPRED-l	1efd_N	0.996	0.885	4.459	threading_5	-------------------------------GIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIG---
6	HHPRED-g	1efd_N	0.996	0.885	3.779	threading_6	-------------------------------GIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIG---
7	SP3	3lhsa	0.209	0.936	4.676	threading_7	----------------ASTISVKDENGTVKVPKDAKRIVVLEYSFADALAALDVKPVGIADDGKKKRIIPVREKIGDYTSVGTRKQPNLEEISKLKPDLIIADSRHKGINKELNKIAPTLSLKSFDGD--YKQNINSFKTIAKALNKEKEGEKRLAEHDKLINKYKDEIKFD-RNQKVLPAVVAKAGLLAHPNYSYVGQFLNELGFKNALSDDVTKGPYLQLDTEHLADLNPERMIIMTDHAKAEFKKLQEDATWKKLNAVKNNRVDIVDRVWARRGLISSEEMAKELVELSKKEQ
8	SAM-T99	3eiwA	0.226	0.868	3.965	threading_8	AS-------------------------------DAKRIVVLEYSFADALAALDVKPVGIADDGKKKRIIPVREKIGDYTSVGTRKQPNLEEISKLKPDLIIADSRHKGINKELNKIAPTLSLKSFDG--DYKQNINSFKTIAKALNKEKEGEKRLAEHDKLINKYKDEIKFD-RNQKVLPAVVAKAGLLAHPNYSYVGQFLNELGFKNALSDDYLKGPYLQLDTEHLADLNPERMIIMTDHDSAEFKKLQEDATWKKLNAVKNNRVDIVDRVWASRGLISSEEMAKELVEL-----
9	MUSTER	3eiwA	0.213	0.936	2.545	threading_9	----------------ASTISVKDENGTVKVPKDAKRIVVLEYSFADALAALDVKPVGIADDGKKKRIIKPREKIGDYTSVGTRKQPNLEEISKLKPDLIIADSRHKGINKELNKIAPTLSLKSFDGD--YKQNINSFKTIAKALNKEKEGEKRLAEHDKLINKYKDEI-KFDRNQKVLPAVVAKAGLLAHPNYSYVGQFLNELGFKNALSSKYLKGPYLQLDTEHLADLNPERMIIMTDHAKAEFKKLQEDATWKKLNAVKNNRVDIVDRVWARRGLISSEEMAKELVELSKKEQ
10	SPARKS	1efdn	0.996	0.885	4.297	threading_10	-------------------------------GIDPNRIVALEWLPVELLLALGIVPYGVADTINYRLWVSEPPLPDSVIDVGLRTEPNLELLTEMKPSFMVWSAGYGPSPEMLARIAPGRGFNFSDGKQPLAMARKSLTEMADLLNLQSAAETHLAQYEDFIRSMKPRFVKRGARPLLLTTLIDPRHMLVFGPNSLFQEILDEYGIPNAWQGETNFWGSTAVSIDRLAAYKDVDVLCFDHDNSKDMDALMATPLWQAMPFVRAGRFQRVPAVWFYGATLSAMHFVRVLDNAIG---

Predicted Tertiary Structure


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TM-score=0.942 to 1efdN TM-score=0.998 to native SCOP code=c.92.2.1	TM-score=0.942 to 1efdN TM-score=0.998 to native SCOP code=c.92.2.1	TM-score=0.802 to 2chuA TM-score=0.842 to native SCOP code=c.92.2.4	TM-score=0.942 to 1efdN TM-score=0.998 to native SCOP code=c.92.2.1	TM-score=0.942 to 1efdN TM-score=0.998 to native SCOP code=c.92.2.1

Experimental Structure

Download 1k2vN

SCOP code=c.92.2.1