Template-based Modeling Results for ALF1_ECOLI

Submitted Primary Sequence

>Length 350
MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNNRPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMGAVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQLANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDSKITIA
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNNRPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMGAVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQLANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDSKITIA
CCHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCEEEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECHHHHHHHCCCCCCCCCEEEEECCCCCCCCCCCCCCEEEEEHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCEECCCCCHHHHHHHHHHHHEECCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNNRPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMGAVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQLANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDSKITIA
43300210031022003130230223202111321011000213223200210110122131122110000001210310102112211211003100200030101000001000110043223310000101233211232223210001022003000100000001113313200210010021024010000000112232143322223110200000010003000000102003222002112212233422231123112300210010011020000011122222220020022001023020100000120123212200200200130002242325
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MTDIAQLLGKDADNLLQHRCMTIPSDQLYLPGHDYVDRVMIDNNRPPAVLRNMQTLYNTGRLAGTGYLSILPVDQGVEHSAGASFAANPLYFDPKNIVELAIEAGCNCVASTYGVLASVSRRYAHRIPFLVKLNHNETLSYPNTYDQTLYASVEQAFNMGAVAVGATIYFGSEESRRQIEEISAAFERAHELGMVTVLWAYLRNSAFKKDGVDYHVSADLTGQANHLAATIGADIVKQKMAENNGGYKAINYGYTDDRVYSKLTSENPIDLVRYQLANCYMGRAGLINSGGAAGGETDLSDAVRTAVINKRAGGMGLILGRKAFKKSMADGVKLINAVQDVYLDSKITIA
1	MUSTER	1ok6A	0.270	0.720	2.015	threading_1	----------------------------------------------ANLTEKFLRIFA-----RRGKSIILAYDHGIEHGPAD-FMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKY---YDGSVPLILKLNGKTTL-YNGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVN-----ETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKVAG---------------------------KVPVLMSGGPKKTEEDFLKQVEGVLEA----ALGIAVGRNVWQR--RDALKFARALAELVYGGK----
2	SPARKS	2qjga	0.219	0.757	5.239	threading_2	-------------------------------------MELFKDIKNLGKLVRLERIFNR----ESEKTVIVPMDHGVSNGPIKGLI------DIRKTVNDVAEGGANAVLLHKGIVRHGHRGYGKDVGLIIHLSGGTAIS-PNPLKKVIVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNER-----DPELVAHAARLGAELGADIVKTSYTGDIDSFRDVVKG---------------------------CPAPVVVAGGPKTNTDEEFLQMIKDAME---AGAAGVAVGRNIFQHDD--VVGITRAVCKIVHENADVEE
3	PROSPECT2	2qjgA	0.219	0.757	3.332	threading_3	ME-------------------------------------LFKDIKNLGKLVRLERIFNR----ESEKTVIVPMDHGVSNGPIKGLI------DIRKTVNDVAEGGANAVLLHKGIVRHGHRGYGKDVGLIIHLSGGTAIS-PNPLKKVIVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNER-----DPELVAHAARLGAELGADIVKTSYTGDIDSFRDV---------------------------VKGCPAPVVVAGGPKTNTDEEFLQMIKDAM---EAGAAGVAVGRNIFQHDDVVG--ITRAVCKIVHENAEIRK
4	PPA-I	1ok6A	0.268	0.726	3.335	threading_4	----------------------------------------------ANLTEKFLRIFA-----RRGKSIILAYDHGIEHGPAD-FMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKY---YDGSVPLILKLNGKTTLY-NGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVWSYPRGGKVVNE-----TAPEIVAYAARIALELGADAMKIKYTGD---------------------------PKTFSWAVKVAGKVPVLMSGGPKTK--TEEDFLKQVEGVLEAGALGIAVGRNVWQRRD--ALKFARALAELVYGGK----
5	HHPRED-l	1w8s_A	0.265	0.711	6.089	threading_5	-----------------------------------------------NLTEKFLRIFAR-----RGKSIILAYDHGIEHGPA-DFMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKYY---DGSVPLILKLNGKTTLY-NGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVN-----ETAPEIVAYAARIALELGADAMKIKYTGDPKTFSWA-------------------------VK--VAGKVPVLMSGGPKTTEEDFLKQVEGVL---EAGALGIAVGRNVWQRR--DALKFARALAELVY-------
6	HHPRED-g	1w8s_A	0.260	0.714	5.262	threading_6	-----------------------------------------------NLTEKFLRIFAR-----RGKSIILAYDHGIEHGPAD-FMDNPDSADPEYILRLARDAGFDGVVFQRGIAEKY---YDGSVPLILKLNGKTTLY-NGEPVSVANCSVEEAVSLGASAVGYTIYPGSGFEWKMFEELARIKRDAVKFDLPLVVESFPRGGKVVNE-----TAPEIVAYAARIALELGADAMKIKYTGDPKTFSWAVKV--------------------------AGKVPVLMSGGPKTKTEEDFLKQVEGVL---EAGALGIAVGRNVWQRRDAL--KFARALAELVY-------
7	SP3	2qjga	0.223	0.757	5.594	threading_7	------------------------------------MELFKDI-KNLGKLVRLERIFNR----ESEKTVIVPMDHGVSNGPIKGLI------DIRKTVNDVAEGGANAVLLHKGIVRHGHRGYGKDVGLIIHLSGGTAI-SPNPLKKVIVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHI-----QNERDPELVAHAARLGAELGADIVKTSYTGDIDSFRDVVKG---------------------------CPAPVVVAGGPKTNTDEEFLQMIKDAME---AGAAGVAVGRNIFQHDD--VVGITRAVCKIVHENADVEA
8	SAM-T99	2qjgA	0.230	0.731	8.014	threading_8	-------------------------------------------------NLGKLVRLERIFNRESEKTVIVPMDHGVSNGPIKGLI------DIRKTVNDVAEGGANAVLLHKGIVRHGHRGYGKDVGLIIHLSGGTAIS-PNPLKKVIVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQN-----ERDPELVAHAARLGAELGADIVKTSYTGDIDSFRDVVKG----------------------------CPAPVVVAGGPKTTDEEFLQMIKDA---MEAGAAGVAVGRNIFQH--DDVVGITRAVCKIVHENADVEE
9	MUSTER	2qjgA	0.223	0.754	1.997	threading_9	------------------------------------MELFKDIK-NLGKLVRLERIFNR----ESEKTVIVPMDHGVSNGPIKGLI------DIRKTVNDVAEGGANAVLLHKGIVRHGHRGYGKDVGLIIHLSGGTAIS-PNPLKKVIVTTVEEAIRMGADAVSIHVNVGSDEDWEAYRDLGMIAETCEYWGMPLIAMMYPRGKHIQNER-----DPELVAHAARLGAELGADIVKTSYTGDIDSFRDVVKGC---------------------------PAPVVVAGGPKTNTDEEFLQMIKDAMEA----AAGVAVGRNIFQH--DDVVGITRAVCKIVHENADVEA
10	SPARKS	3gkfo	0.207	0.760	4.784	threading_10	-----------------------GKDRTDQPQKNIPFTLKGCGALDWGMQSRLSRIFNP----KTGKTVMLAFDHGYFQGPTTGLERIDINI------APLFE-HADVLMCTRGILRSVVPPATN-RPVVLRASGANSI-LAELSNEAVALSMDDAVRLNSCAVAAQVYIGSEYEHQSIKNIIQLVDAGMKVGMPTMAVTGVRD-------------QRYFSLATRIAAEMGAQIIKTYYVEK--GFERIVAG----------------------------CPVPIVIAGGKKLPEREALEMCWQAID---QGASGVDMGRNIFQSDH--PVAMMKAVQAVVHHNETADR

Predicted Tertiary Structure


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TM-score=0.854 to 1ok6A SCOP code=c.1.10.1	TM-score=0.854 to 1ok6A SCOP code=c.1.10.1	TM-score=0.795 to 1ok6A SCOP code=c.1.10.1	TM-score=0.791 to 1ok6A SCOP code=c.1.10.1	TM-score=0.855 to 1ok6A SCOP code=c.1.10.1