Template-based Modeling Results for EMRK_ECOLI

Submitted Primary Sequence

>Length 387
MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYAYWSMELEDMISTDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSMTATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYAYWSMELEDMISTDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSMTATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL
CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHECCCCEEEECCEEEEEEEEEEECCCCEEEEEEEEECCCEECCCCEEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCEEEEEECCCCCEECCCCEEEEEEECCCEEEEEEECHHHHCCCCCCCEEEEEEECCCCCCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEEECCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCEEECCCCEEEEEECCCCCHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYAYWSMELEDMISTDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSMTATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL
554233334423433000000000000000000100012220200220102010020003110101101022222034111001014220110023012201211320231122022111101102111220121121122115322213310220221121022102101310311222123222212210120011022001103202010212010011102202101321000000104201010103121022032122010000011441202010100120122211111222222210210110101010234322332021000010100143332231132121112231110200223222113101200222154
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MEQINSNKKHSNRRKYFSLLAVVLFIAFSGAYAYWSMELEDMISTDDAYVTGNADPISAQVSGSVTVVNHKDTNYVRQGDILVSLDKTDATIALNKAKNNLANIVRQTNKLYLQDKQYSAEVASARIQYQQSLEDYNRRVPLAKQGVISKETLEHTKDTLISSKAALNAAIQAYKANKALVMNTPLNRQPQVVEAADATKEAWLALKRTDIKSPVTGYIAQRSVQVGETVSPGQSLMAVVPARQMWVNANFKETQLTDVRIGQSVNIISDLYGENVVFHGRVTGINMGTGNAFSLLPAQNATGNWIKIVQRVPVEVSLDPKELMEHPLRIGLSMTATIDTKNEDIAEMPELASTVTSMPAYTSKALVIDTSPIEKEISNIISHNGQL
1	MUSTER	3fppB	0.158	0.669	1.627	threading_1	---------------------------------------RDLQQSVLAKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID--------------PEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYT------------------RIVAPMAGEVTQITTLQGQTVIAAPNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGD-QLTRYEGQIKDVLPT---------PEKVND-----AIFYYARFEVPNPN---GLLRLDMTAQVHIQLTDVKNVLT---------------------------------------
2	SPARKS	3fppa	0.161	0.674	3.960	threading_2	-------------------------------------PGDLQQSVLTGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLME--------------LRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKR------------------NQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGD-QLTRYEGQIKDVLPT---------PEKVNDA-----IFYYARFEVPNPN---GLLRLDMTAQVHIQLTDVKNVLT---------------------------------------
3	PROSPECT2	3fppA	0.156	0.677	3.325	threading_3	PGDLQQ------------------------------------SVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLM--------------ELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQ------------------IKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLG-DQLTRYEGQIKDVLPT---------PEKVNDAI-----FYYARFEVPNPN---GLLRLDMTAQVHIQLTDVK---------------------------------------NVLT
4	PPA-I	3fppB	0.155	0.682	2.518	threading_4	----------------------------------RPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVID--------------PEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYT------------------RIVAPMAGEVTQITTLQGQTVIAAQNILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGD-QLTRYEGQIKDVLPT---------PEKVND-----AIFYYARFEVPNPN---GLLRLDMTAQVHIQLTDVKNVLT---------------------------------------
5	HHPRED-l	3fpp_A	0.158	0.669	4.814	threading_5	--------------------------------------PLQQSVLATGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQR--------------QQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDA------------------QIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGD-QLTRYEGQIKDVLPTPEKVND--------------AIFYYARFEVPNPN---GLLRLDMTAQVHIQLTDKNVLT----------------------------------------
6	HHPRED-g	3fpp_A	0.164	0.677	4.178	threading_6	------------------------------PGDLQQ------SVLATGKLDLRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLME--------------LRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASL------------------DTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQL-TRYEGQIKDVLPTPEK----------VNDA----IFYYARFEVPNP---NGLLRLDMTAQVHIQLTDVKNVL-T--------------------------------------
7	SP3	3fppa	0.169	0.674	3.710	threading_7	-------------------------------------PGDLQQSVLTGKLDARKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLME--------------LRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKR------------------NQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGD-QLTRYEGQIKDVL----------PTPEKVNDAIFY----YARFEVPNPN---GLLRLDMTAQVHIQLTDVKNVLT---------------------------------------
8	SAM-T99	3fppB	0.160	0.661	3.801	threading_8	RPGDLQQSVLATGKLDALR----------------------------------KVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQR--------------QQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQ------------------IKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQILTLADMSAMLVKAQVSEADVIHLKPGQKAWFTVLGDQL-TRYEGQIKDVLPT------------------KVNDAIFYYARFEVPNPN-GLLRLDMTAQVHIQLTD---------------------------------------------
9	MUSTER	3lnnA	0.192	0.809	1.470	threading_9	LRHEGERLVVPAESPLRRTLAVAPA--------TRETVAAPFNLP--AMIEADLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD-------------------------LAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGGH----------------ILAVRSPINGRVVDLNAATGAYWNDTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFDAY--DDPQPGKVRYVGQ-------ILDAD--TRT-------TKVRMVFDNPD---GRLRPGMFAQATFLSQPHEGIVVPMSA--EVAPWQFEPRVIKLGAQIGDREVDRVVVKEGVL
10	SPARKS	3lnna	0.185	0.809	2.946	threading_10	LRHEGERLVVPAESPLRRTLAVAPATRE--------TVAAPFNLP--AMIEADLVKVLPPLAGRIVSLNKQLGDEVKAGDVLFTIDSAD-------------------------LAQANSDAAKARAAMTMARRNLDRQRELDKSEIAAKRDFEQAQSDYDQAASESQRADARLAQLGAKGGGTLQAGGG----------------HILAVRSPINGRVVDLNAATGAYWNDTASLMTVADLSHVFVTANAQEKDLGHVYVGQSATVKFD--AYDDPQPGKVRYVGQILDAD---------TRT-------TKVRMVFDNPD---GRLRPGMFAQATFLSQPHEGIVVPMSA--IVQSGFYTRAFVEVAPWQFEPRVIKLGAQIGDR

Predicted Tertiary Structure


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TM-score=0.476 to 1iyuA SCOP code=b.84.1.1	TM-score=0.496 to 1iyuA SCOP code=b.84.1.1	TM-score=0.487 to 1iyuA SCOP code=b.84.1.1	TM-score=0.487 to 1iyuA SCOP code=b.84.1.1	TM-score=0.482 to 1iyuA SCOP code=b.84.1.1