Template-based Modeling Results for SDHD_ECOLI

Submitted Primary Sequence

>Length 442
MENAKMNSLIAQYPLVKDLVALKETTWFNPGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEEMNQYLAKGR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MENAKMNSLIAQYPLVKDLVALKETTWFNPGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEEMNQYLAKGR
CCCCCHHHHHHCCHHHHHHHHCCCCEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCHHHHHHCHHHHHHCCCCCCCCEECHHHHHHHHHHHCCCCCCEEEEEEHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCHHHHHHHCCCEEEEECCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHCCCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCEEEECHHHHHHHHHHHHHHCCCEECCHHHHHHHHHHHHHHCHHHHHHCCCCHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MENAKMNSLIAQYPLVKDLVALKETTWFNPGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEEMNQYLAKGR
5543313211321210210121220000011122123213200012300220131023002100300130022122130300202201320142123322020001222212210002000000100010131023122222333123112230132223100000010100100000023020200000023032111210432201001122111100310130043231000012311210010000001201210242222122311100000001000000000001311233010000102201000100222222102133121322100200002301210030023102100001130002000100332102011010000000120011121132221223213311000000211211321022113325
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MENAKMNSLIAQYPLVKDLVALKETTWFNPGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEEMNQYLAKGR
1	MUSTER	3r0xA	0.861	0.962	3.162	threading_1	---ENIQKLIARYPLVEDLVALKETTWFNPGATSLAQGLPYVGLTEQDVNAAHDRLARFAPYLAKAFPQTAAAGG-IESDVVAIPA-QKRLEKEYGQTI-NGELLKKDSHLAISGSIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSIGISA-CIGFKVTVHSA-DARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVVDASHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC-LLGVYTGLHDAISVQDIGIDNLTAADGLAVGRASGFVGRAER-LLDGLYTLDDQTYD--LGWLAQEEGIRLEPSALAG-AGPQRICASVAYQQRHGFSQTQLGNATHLVWATGGGVPED--EEQYLAK--
2	SPARKS	3ss7x	1.000	0.989	7.977	threading_2	-----MNSLIAQYPLVKDLVALKETTWFNPGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEEMNQYLAKGR
3	PROSPECT2	3r0xA	0.809	0.962	4.481	threading_3	---ENIQKLIARYPLVEDLVALKETTWFNPGATSLAQGLPYVGLTEQDVNAAHDRLARFAPYLAKAFPQTAAAGG-IESDVVAIPAQKRLEKEY--GQTINGELLKKDSHLAISGSIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSIGISAC-IGFKVTVHSA-DARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVVDASHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCLLGVYTGL-HDAISVQDIGIDNLTAADGLAVGRASGFVGRAE-RLLDGLYTLDDQTYDLGWLAQEE--GIRLEPSALAG-AGPQRICASVAYQQRHGFSQTQLGNATHLVWATGGGVPEDEE--QYLA--K
4	PPA-I	3r0xA	0.854	0.962	4.703	threading_4	---ENIQKLIARYPLVEDLVALKETTWFNPGATSLAQGLPYVGLTEQDVNAAHDRLARFAPYLAKAFPQTAAAGG-IESDVVAIPA-QKRLEKEYGQTI-NGELLKKDSHLAISGSIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSIGISA-CIGFKVTVHS-ADARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVVDASHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCLLGVYT-GLHDAISVQDIGIDNLTAADGLAVGRASGFVGRAER-LLDGLYTLDDQTYD--LGWLAQEEGIRLEPSALAG-AGPQRICASVAYQQRHGFSQTQLGNATHLVWATGGGVPED--EEQYLAK--
5	HHPRED-l	3r0x_A	0.896	0.962	4.115	threading_5	-EN--IQKLIARYPLVEDLVALKETTWFNPGATSLAQGLPYVGLTEQDVNAAHDRLARFAPYLAKAFPQTAAAGG-IESDVVAIPA-QKRLEKEYGQTINGE-LLKKDSHLAISGSIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSIGI-SACIGFKVTVH-SADARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVVDASHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC-LLGVYTGLHDAISVQDIGIDNLTAADGLAVGRASGFVGRA-ERLLDGLYTLDDQT-YD-LGWLAQEEGIRLEPSALAG-AGPQRICASVAYQQRHGFSQTQLGNATHLVWATGGG-VPEDE-EQYLAK--
6	HHPRED-g	3r0x_A	0.896	0.962	5.581	threading_6	-EN--IQKLIARYPLVEDLVALKETTWFNPGATSLAQGLPYVGLTEQDVNAAHDRLARFAPYLAKAFPQTAAAGG-IESDVVAIPA-QKRLEKEYGQTINGE-LLKKDSHLAISGSIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSIGI-SACIGFKVTVH-SADARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVVDASHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPC-LLGVYTGLHDAISVQDIGIDNLTAADGLAVGRASGFVGRA-ERLLDGLYTLDDQT-YD-LGWLAQEEGIRLEPSALAG-AGPQRICASVAYQQRHGFSQTQLGNATHLVWATGGG-VPEDE-EQYLAK--
7	SP3	3ss7x	1.000	0.989	7.964	threading_7	-----MNSLIAQYPLVKDLVALKETTWFNPGTTSLAEGLPYVGLTEQDVQDAHARLSRFAPYLAKAFPETAATGGIIESELVAIPAMQKRLEKEYQQPISGQLLLKKDSHLPISGSIKARGGIYEVLAHAEKLALEAGLLTLDDDYSKLLSPEFKQFFSQYSIAVGSTGNLGLSIGIMSARIGFKVTVHMSADARAWKKAKLRSHGVTVVEYEQDYGVAVEEGRKAAQSDPNCFFIDDENSRTLFLGYSVAGQRLKAQFAQQGRIVDADNPLFVYLPCGVGGGPGGVAFGLKLAFGDHVHCFFAEPTHSPCMLLGVHTGLHDQISVQDIGIDNLTAADGLAVGRASGFVGRAMERLLDGFYTLSDQTMYDMLGWLAQEEGIRLEPSALAGMAGPQRVCASVSYQQMHGFSAEQLRNTTHLVWATGGGMVPEEEMNQYLAKGR
8	SAM-T99	3r0xA	0.855	0.955	3.585	threading_8	---ENIQKLIARYPLVEDLVALKETTWFNPGATSLAQGLPYVGLTEQDVNAAHDRLARFAPYLAKAFPQTAAAGGI-ESDVVAIPAQKRL-EKEYGQTINGE-LLKKDSHLAISGSIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSIGI-SACIGFKVTVH-SADARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVVDASHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCLL-GVYTGLHDAISVQDIGIDNLTAADGLAVGRASGFVGRAERL-LDGLYTLDDQTYD--LGWLAQEEGIRLEPSALAG-AGPQRICASVAYQQRHGFSQTQLGNATHLVWATGGGVDEEQYLA-------
9	MUSTER	3iauA	0.204	0.810	1.943	threading_9	MSPI------VSVPDITAPVENVPAIL----PKVVPGELIVNKPTGGDSDELFQYLVDILA---------PVYDVAIESPLELAEKLSDRLG--------VNFYIKRED-KQRVFSF-LRGAYNMMSNL---------------------SREELDK-----VITASAGNHAQGVALAGQRLNCVAKIVMPTTTPQIKIDAVRALGGDVVLYGKTFDEAQTHALELSEKDGL-KYIPPFDDPGVIKGQGTIGTEINRQLKD----IH-----AVFIPVGGGGLIAGVATFFKQI-APNTKIIGVEPYGAASMTLSLHEGHRVKLSNVD------TFADGVAVALVGEYTFAKCQELIDGMVLVANDGISAAIKDVYDEGRNILETSGAVAIAGAAAYCEFYK-----------IKNENIVAIASGANMDF-SKLHKVTELAG
10	SPARKS	3r0xa	0.868	0.962	6.649	threading_10	---ENIQKLIARYPLVEDLVALKETTWFNPGATSLAQGLPYVGLTEQDVNAAHDRLARFAPYLAKAFPQTAAAGGI-ESDVVAIPAQ-KRLEKEYGQTI-NGELLKKDSHLAISGSIKARGGIYEVLTHAEKLALEAGLLTTDDDYSVLLSPEFKQFFSQYSIAVGSTGNLGLSIGISA-CIGFKVTVH-SADARAWKKAKLRSHGVTVVEYEDDYGVAVEQGRKAAQSDPNCFFIDDENSRTLFLGYAVAGQRLKAQFAQQGRVVDASHPLFVYLPCGVGGGPGGVAFGLKLAFGDNVHCFFAEPTHSPCL-LGVYTGLHDAISVQDIGIDNLTAADGLAVGRASGFVGR-AERLLDGLYTLDDQTYD--LGWLAQEEGIRLEPSALAG-AGPQRICASVAYQQRHGFSQTQLGNATHLVWATGGGVPEDEE--QYLAK--

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.768 to 1pwhA SCOP code=c.79.1.1	TM-score=0.767 to 1pwhA SCOP code=c.79.1.1	TM-score=0.778 to 1ve5A SCOP code=c.79.1.1	TM-score=0.760 to 1pwhA SCOP code=c.79.1.1	TM-score=0.766 to 1pwhA SCOP code=c.79.1.1