Template-based Modeling Results for DPPD_ECOLI

Submitted Primary Sequence

>Length 327
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL
CCCEEEECCEEEEECCCCEEEEECCCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCEEEEEEEEECCEEHHCCCHHHHHHHHCCCEEEEECCCHHHCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCHHHHHHHCCEEEEEECCEEEEECCHHHHHHCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCEEECCCCEEEEECCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL
332120120201011320202001500010341100000021211200000001000332020121100021210230233111301121000001200110011011021001003112312232112201100230201202201230111011000000000000103020000110100000100010030022014424000000000000002002100000001001202021012112110020003001312333330220211110223213002011202201310334212112023111000001233225334
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MALLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKSTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGDAHAIFHAPRHPYTQALLRALPEFAQDKERLASLPGVVPGKYDRPNGCLLNPRCPYATDRCRAEEPALNMLADGRQSKCHYPLDDAGRPTL
1	MUSTER	3dhwC	0.249	0.945	2.002	threading_1	M--IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLL-----RPTEGSVLVDGQELTTLSESELTKAR-RQIGMIFQ----NLLSSRTVFGNVALPLEL--NTPKDEVKRRVTELLSLVGLGD---KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFTDCVPTGQSVDAPLLSETARRFNVNN-QMDYAGGVKIMLTEMHGTQQDTQAA
2	SPARKS	1b0ua	0.302	0.758	4.125	threading_2	-NKLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGAIIVNGQNIKVADKNQLRLLR-TRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID--ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKLEH----------------------------------------------------------------
3	PROSPECT2	2d3wA	0.245	0.725	3.481	threading_3	M--LSIKDLHVSV----EDKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPEDR---AGEGIFMAFQYPV--EIPGVSNQFFLQTALNAVETLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIPDYVHVLYQGRIVKSGDFTLVKQLEEQGYG---------------------------------------------------------------------------WL
4	PPA-I	2zu0C	0.233	0.734	4.256	threading_4	--MLSIKDLHVSVED----KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPEDRAGEG---IFMAFQYPV--EIPGVSNQFFLQTALNAVRSLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIPDYVHVLYQGRIVKSGDFTLVKQLEEQGYG--------WLTEQ----------------------------------------------------------------
5	HHPRED-l	1b0u_A	0.306	0.758	2.547	threading_5	--KLHVIDLHKRYG----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKP----SEGAIIVNGQNINLVRDKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID--ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKLEH----------------------------------------------------------------
6	HHPRED-g	1b0u_A	0.306	0.758	2.427	threading_6	-NKLHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPS----EGAIIVNGQNINLVRDKNQLRLLRTRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID--ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGLKKLEH-----------------------------------------------------------------
7	SP3	1b0ua	0.304	0.755	3.872	threading_7	K--LHVIDLHKRY----GGHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSE----GAIIVNGQNIKVADKNQLRLLR-TRLTMVFQHF--NLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGID--ERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEE-GKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFGNPQSPRLQQFLKGSLKKLEH----------------------------------------------------------------
8	SAM-T99	3dhwC	0.247	0.914	2.920	threading_8	--MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESELTKAR-RQIGMIFQ--HFNLLSSRTVFGNVALPLEL-DNTPKDEVKRRVTELLSLVGLG---DKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEP------------FTDCVPMLRLEFTGQSVDAPLLSETARRFNVNNNIISA---
9	MUSTER	2zu0C	0.231	0.728	1.895	threading_9	--MLSIKDLHVSV------KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGR--EDYEVTGGTVEFKGKDLLALSPEDRAGEG---IFMAFQYPV--EIPGVSNQFFLQTALNAVRSLDRFDFQDLMEEKIALLKMPE-DLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDG-KRSFIIVTHYQRILDYIPDYVHVLYQGRIVKSGDFTLVKQLEEQGYGW--------LTEQ----------------------------------------------------------------
10	SPARKS	3dhwc	0.265	0.865	3.995	threading_10	--MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPT----EGSVLVDGQELTTLSESELTKAR-RQIGMIFQH--FNLLSSRTVFGNVALPLEL-DNTPKDEVKRRVTELLSLVGLGD---KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLAQKFIQSTLHLDIPEDYQERLQAEPFT-------------------------------DCVPMLRLEFTGQSVDAPLL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.815 to 3dhwC SCOP code=c.37.1.12	TM-score=0.809 to 3dhwC SCOP code=c.37.1.12	TM-score=0.855 to 1b0uA SCOP code=c.37.1.12	TM-score=0.696 to 1ji0A SCOP code=c.37.1.12	TM-score=0.726 to 1ji0A SCOP code=c.37.1.12