Template-based Modeling Results for PRIM_ECOLI

Submitted Primary Sequence

>Length 581
MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK
CCCCCCHHHHHHHHHHCCHHHHHHHCCCEEECCCCEEEECCCCCCCCCCEEEECCCCEEEEECCCCCCCHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCHHHHHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHCCCCEECCCCCEEECCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCEEECHHHCCCHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHCCHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK
55240242102101320201200322020222232010001113331110100234200000001220100200111250312200210032141312232222222123112210120020012001210222222201210241222330022011110130021003201223332300230100121331210010210000001144110000001101332231121231311332320100110122223321000020010000002110310000001101231021013003100000102321220012002101211232220100102324102100432133002200340120010001001332322223011300220130023031320121002100420212231112201122232222332232442112100000021130022023232233231200000220021023212211120022132222010012011233213331012001200220021112211321122333322233111101211332255
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAGRIPRVFINDLLARTDIVDLIDARVKLKKQGKNFHACCPFHNEKTPSFTVNGEKQFYHCFGCGAHGNAIDFLMNYDKLEFVETVEELAAMHNLEVPFEAGSGPSQIERHQRQTLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNDQGRSYDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILDDSQLERLMPKAAESGVSRPVPQLKRTTMRILIGLLVQNPELATLVPPLENLDENKLPGLGLFRELVNTCLSQPGLTTGQLLEHYRGTNNAATLEKLSMWDDIADKNIAEQTFTDSLNHMFDSLLELRQEELIARERTHGLSNEERLELWTLNQELAKK
1	MUSTER	2au3A	0.347	0.690	2.679	threading_1	M-----SSDIDELRREIDIVDVISEYLNLEKVGSNYRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKLDLEKIS--------KDEKVYVALDRVCDFYRESLL--KNREASEYVKSRGIDPKVARKFDLGYAPS-SEALVKVLKENDLLEAYLETKNLLSP-TKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLSA----VEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTARENLEEKTREFRYYLGF--------ISDGVRRFALASEFHTKYKVPMEILLMKI-------------------------------------------------------------------------------------------------------------------------------------------------------
2	SPARKS	2au3a	0.343	0.692	7.362	threading_2	-----MSSDIDELRREIDIVDVISEYLNLEKVGSNYRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKLDLEKIS--------KDEKVYVALDRVCDFYRESLLK--NREASEYVKSRGIDPKVARKFDLGYAPS-SEALVKVLKENDL-LEAYLETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIEDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLS---AGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTARENLEEKTREFRYYL--------GFISDGVRRFALASEFHTKYKVPMEILLMKI-------------------------------------------------------------------------------------------------------------------------------------------------------
3	PROSPECT2	2au3A	0.338	0.692	4.272	threading_3	MSS-----DIDELRREIDIVDVISEYLNLEKVGSNYRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKLDLEKIS--------KDEKVYVALDRVCDFYRESL--LKNREASEYVKSRGIDPKVARKFDLGYAPSSEA-LVKVLKENDLLEAYLETKNL-LSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPL---LLSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTAREN--------LEEKTREFRYYLGFISDGVRRFALASEFHTKYKVPMEIL-------------------------------------------------------------------------------------------------------------------------------------------------------LMKI
4	PPA-I	2au3A	0.346	0.692	4.149	threading_4	-----MSSDIDELRREIDIVDVISEYLNLEKVGSNYRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKLDLEKIS--------KDEKVYVALDRVCDFYRESLLK--NREASEYVKSRGIDPKVARKFDLGYAPS-SEALVKVLKENDLLEAYLETKNLLSPTK-GVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEDSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLSAG---VEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTARENLEEKTREFRYYLGF--------ISDGVRRFALASEFHTKYKVPMEILLMKI-------------------------------------------------------------------------------------------------------------------------------------------------------
5	HHPRED-l	2au3_A	0.336	0.692	9.041	threading_5	----MSSD-IDELRREIDIVDVISEYLNLEKVGSNYRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKLDLEKISKDE--------KVYVALDRVCDFYRESLL--KNREASEYVKSRGIDPKVARKFDLGYAPSSEALVKVLKE-ND-LLEAYLETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVEKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPL---LLSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTARENLEEKTR--------EFRYYLGFISDGVRRFALASEFHTKYKVPMEILLMKI-------------------------------------------------------------------------------------------------------------------------------------------------------
6	HHPRED-g	2au3_A	0.336	0.692	7.479	threading_6	----MSSD-IDELRREIDIVDVISEYLNLEKVGSNYRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKLDLEKIS--------KDEKVYVALDRVCDFYRESLL--KNREASEYVKSRGIDPKVARKFDLGYAPSSEALVKVLKEND--LLEAYLETKNLLSPTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIEDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPL---LLSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTARENLEEKTREFR--------YYLGFISDGVRRFALASEFHTKYKVPMEILLMKI-------------------------------------------------------------------------------------------------------------------------------------------------------
7	SP3	2au3a	0.348	0.692	7.568	threading_7	MS-----SDIDELRREIDIVDVISEYLNLEKVGSNYRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKLDLEKIS--------KDEKVYVALDRVCDFYRESLLK--NREASEYVKSRGIDPKVARKFDLGYAPS-SEALVKVLKENDLLEAYLETKNLLS-PTKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIEDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLLLS---AGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTARENLEEKTREFRYYL--------GFISDGVRRFALASEFHTKYKVPMEILLMKI-------------------------------------------------------------------------------------------------------------------------------------------------------
8	SAM-T99	2au3A	0.341	0.692	7.947	threading_8	M-----SSDIDELRREIDIVDVISEYLNLEKVGSNYRTNCPFHPDDTPSFYVSPSKQIFKCFGCGVGGDAIKFVSLYEDISYFEAALELAKRYGKKLDLE--------KISKDEKVYVALDRVCDFYRESLLKN--REASEYVKSRGIDPKVARKFDLGYAPSS-EALVKVLKENDLLEAYLETKNLLSP-TKGVYRDLFLRRVVIPIKDPRGRVIGFGGRRIVDKSPKYINSPDSRVFKKGENLFGLYEAKEYIKEEGFAILVEGYFDLLRLFSEGIRNVVAPLGTALTQNQANLLSKFTKKVYILYDGDDAGRKAMKSAIPLL---LSAGVEVYPVYLPEGYDPDEFIKEFGKEELRRLINSSGELFETLIKTARENLEEKTREFRY--------YLGFISDGVRRFALASEFHTKYKVPMEILLMKI-------------------------------------------------------------------------------------------------------------------------------------------------------
9	MUSTER	1eqnA	0.967	0.527	1.975	threading_9	----------------------------------------------------------------------------------------------------------------RQTLYQL-DGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGLVTN-DQGRSYDRFRE-RVFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGY-DVVALAQYGINYAVASLGTSTTADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPY-TDGRQLRF-FLPDGEDPDTLVRKEGKEAFEARE--QAPLSAFLFNSLP-QVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILDDSQL----------------------------------------------------------------------------------------------------------------------------------------------------------
10	SPARKS	1dd9a	0.987	0.534	6.140	threading_10	------------------------------------------------------------------------------------------------------------------TLYQLMDGLNTFYQQSLQQPVATSARQYLEKRGLSHEVIARFAIGFAPPGWDNVLKRFGGNPENRQSLIDAGMLVTNRS---YDRFRERVMFPIRDKRGRVIGFGGRVLGNDTPKYLNSPETDIFHKGRQLYGLYEAQQDNAEPNRLLVVEGYMDVVALAQYGINYAVASLGST-TADHIQLLFRATNNVICCYDGDRAGRDAAWRALETALPYMTDGRQLRFMFLPDGEDPDTLVRKEGKEAFEARMEQAMPLSAFLFNSLMPQVDLSTPDGRARLSTLALPLISQVPGETLRIYLRQELGNKLGILDDSQLE---------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.655 to 1eqnA TM-score=0.832 to native SCOP code=e.13.1.1	TM-score=0.650 to 1eqnA TM-score=0.830 to native SCOP code=e.13.1.1	TM-score=0.648 to 1eqnA TM-score=0.829 to native SCOP code=e.13.1.1	TM-score=0.646 to 1eqnA TM-score=0.817 to native SCOP code=e.13.1.1	TM-score=0.649 to 1eqnA TM-score=0.825 to native SCOP code=e.13.1.1

Experimental Structure

Download 3b39A

SCOP code=e.13.1.1