Template-based Modeling Results for DNAC_ECOLI

Submitted Primary Sequence

>Length 245
MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRVTGKEY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRVTGKEY
CCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHHCCCCHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHHHHHHHCCCEEEEECCCCHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRVTGKEY
54212201220230032213220321321011122210231111233221221220033120232222021321313131112001102200220222110000002111011000000011003321100000012002101311442222132002101301000001000223232112000200130022320000002020320131002100100220100002022312213232434
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKNVGDLMQRLQKMMPAHIKPAFKTGEELLAWQKEQGAIRSAALERENRAMKMQRTFNRSGIRPLHQNCSFENYRVECEGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMKDTFRNSGTSEEQLLNDLSNVDLLVIDEIGVQTESKYEKVIINQIVDRRSSSKRPTGMLTNSNMEEMTKLLGERVMDRMRLGNSLWVIFNWDSYRSRVTGKEY
1	MUSTER	2w58A	0.219	0.727	2.129	threading_1	--------------------------------------------------KRQESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHS------TMNEKLDYIKKVPVLMLDDLGAESW--VRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHKAARIMERIRY-LAYPIEITGPNRR--------
2	SPARKS	2w58a	0.218	0.731	3.366	threading_2	--------------------------------------------------KRQESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK-----HSQTMNEKLDYIKKVPVLMLDDLGAESWVRDD--VFGPILQYRMFENLPTFFTSNFDMQQLAHVKAARIMERIRYL-AYPIEITGPNRR--------
3	PROSPECT2	2w58A	0.223	0.731	2.439	threading_3	KR--------------------------------------------------QESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYEKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKH-----SQTMNEKLDYIKKVPVLMLDDLGAESWVR--DDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTARIMERIR-YLAYPIEITGPNRR--------
4	PPA-I	2w58A	0.218	0.731	2.840	threading_4	--------------------------------------------------KRQESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSQ-----TMNEKLDYIKKVPVLMLDDLGAESW--VRDDVFGPILQYRMFENLPTFFTSNFDMQQLAHHKAARIMERIRY-LAYPIEITGPNRR--------
5	HHPRED-l	2qgz_A	0.198	0.722	2.894	threading_5	-----------------------------------------------QKQAAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFSAILDFVEQYPSAQKGLYLYGDMGIGKSYLLAAMAHELSKKGVSTTLLHFPSFAIDVKNAIS------KEEIDAVKNVPVLILDDIGA------VRDVLQVILQYRMLEELPTFFTSNYSFADLERKWAKRVMERVR-YLAREFHLEGANRR--------
6	HHPRED-g	2qgz_A	0.195	0.690	2.640	threading_6	--------------------------------------------------AAISERIQLVSLPKSYRHIHLSDIDVNNASRMEAFS----AILDFVEQQKGLYLYGDMGIGKSYLLAAMAHELSKKGVSTTLLHFPSFAIDVKNAIS------KEEIDAVKNVPVLILDDIGA------VRDVLQVILQYRMLEELPTFFTSNYSFADLERKW-KRVMERV-RYLAREFHLEGANRR--------
7	SP3	2w58a	0.212	0.731	3.425	threading_7	--------------------------------------------------KRQESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFREL-----KHSQTMNEKLDYIKKVPVLMLDDLGAESWVRD--DVFGPILQYRMFENLPTFFTSNFDMQQLAHHKAARIMERIRYL-AYPIEITGPNRR--------
8	SAM-T99	2w58A	0.227	0.718	3.730	threading_8	----------------------------------------------------QESLIQSMFMPREILRASLSDVDLNDDGRIKAIRFAERFVAEYGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSQ-----TMNEKLDYIKKVPVLMLDDLGAES---WVRDVFGPILQYRMFENLPTFFTSNFDMQQLAHHLTARIMERIRYLAY-PIEITGPNRR--------
9	MUSTER	3eccA	0.209	0.702	2.076	threading_9	--------------------------------------------------------------AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKGIRGYFFDTKDLIFRLKHLMDEG--KDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQRSSVRISADLASRLGE-MNELLVIKGSDLR--------
10	SPARKS	3ec2a	0.208	0.706	2.869	threading_10	--------------------------------------------------------------AKRYWNANLDTYHPKNVSQNRALLTIRVFVHNFPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKGIRGYFFDTKDLIFRLKH---LDEGKDTKFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIITTNYSLQRSSVRISADLASRL--GENVVSKIYENELLVIK-----

Predicted Tertiary Structure


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TM-score=0.732 to 1l8qA SCOP code=a.4.12.2	TM-score=0.721 to 1l8qA SCOP code=a.4.12.2	TM-score=0.711 to 1l8qA SCOP code=a.4.12.2	TM-score=0.716 to 1l8qA SCOP code=a.4.12.2	TM-score=0.730 to 1l8qA SCOP code=a.4.12.2