Template-based Modeling Results for DNAB_ECOLI

Submitted Primary Sequence

>Length 471
MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
CCCCCCCCCCCCCCCCCCCCCHHCCCCCCCHHHHHHHHHHHHCCHHHHHHHHHHCCHHHCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCHHHCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEECHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCEEEEEECHHHCCCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCEEEECCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
553332233332324343331221310121130010000000013300220042022310123102100100040142222010100020035222122010010002003201011001100200111010220020022002201233232032002201210130122324333212101200220022023114233321210300030013201102301000000111201000000001000233322000000112132002100022130312202213132310220020003004312000011110102100010230054222110000000100423222321211012003101200240200000001122323322232121010320120221010000001221134323241101000021331210102000112102011122333469
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MAGNKPFNKQQAEPRERDPQVAGLKVPPHSIEAEQSVLGGLMLDNERWDDVAERVVADDFYTRPHRHIFTEMARLQESGSPIDLITLAESLERQGQLDSVGGFAYLAELSKNTPSAANISAYADIVRERAVVREMISVANEIAEAGFDPQGRTSEDLLDLAESRVFKIAESRANKDEGPKNIADVLDATVARIEQLFQQPHDGVTGVNTGYDDLNKKTAGLQPSDLIIVAARPSMGKTTFAMNLVENAAMLQDKPVLIFSLEMPSEQIMMRSLASLSRVDQTKIRTGQLDDEDWARISGTMGILLEKRNIYIDDSSGLTPTEVRSRARRIAREHGGIGLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVYHENSDLKGIAEIIIGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE
1	MUSTER	2q6tA	0.478	0.887	3.454	threading_1	-------------------------IPPHSLEAEQSVLGSILLDSDVMDEVEGLLSPEAFYAEAHRKIYAAMQALRSQGRPVDLVTLSEELSRRGQLEEVGGTAYLLQLSEATPTAAYAEHYARIVAEKWTLRRLIQAAGEAMRLAYEEAG-SLDEILDTAGKKILEVALTKTDTE--ARPMRELVHETFEHIEAV-----------RTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLVSQNQ-VGLIIIDYLQLMSG----PNRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAEIIVGKQRNGPTGTVELQFHASHVRFNDL--------
2	SPARKS	2r6aa	0.464	0.892	7.265	threading_2	------------------------RIPPQSIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTRED-EIDVLLDEADRKIMEVSQRKHS--GAFKNIKDILVQTYDNIEMLHNR-DGEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESG-LGMIVIDYLQLIQGS---GRRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR---RPMMSDIRESGSIEQDADIVAFLYRDDYK-------NIIEIIIAKQRNGPVGTVQLAFIKEYNKFVNL--------
3	PROSPECT2	2r6aA	0.464	0.892	5.120	threading_3	------------------------RIPPQSIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTREDEI-DVLLDEADRKIMEVSQRKHSGA--FKNIKDILVQTYDNIEMLH-NRDGEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSL-SNAGIYIDDTPSIRVSDIRAKCRRLKQESG-LGMIVIDYLQLIQGS---GRRQQEVSEISRSLKALARELEVPVIALSQLSRSVE---QRRPMMSDIRESGSIEQDADIVAFLYRD-------DYKNIIEIIIAKQRNGPVGTVQLAFIKEYNKFVNL--------
4	PPA-I	2q6tA	0.478	0.887	6.038	threading_4	-------------------------IPPHSLEAEQSVLGSILLDSDVMDEVEGLLSPEAFYAEAHRKIYAAMQALRSQGRPVDLVTLSEELSRRGQLEEVGGTAYLLQLSEATPTAAYAEHYARIVAEKWTLRRLIQAAGEAMRLAYEEAG-SLDEILDTAGKKILEVALTKTDT--EARPMRELVHETFEHIEAV-----------RTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSE-APIYIDDTPDLTLMEVRARARRLVSQNQ-VGLIIIDYLQLMSG----PNRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAEIIVGKQRNGPTGTVELQFHASHVRFNDL--------
5	HHPRED-l	2q6t_A	0.481	0.887	5.332	threading_5	-------------------------IPPHSLEAEQSVLGSILLDSDVMDEVEGLLSPEAFYAEAHRKIYAAMQALRSQGRPVDLVTLSEELSRRGQLEEVGGTAYLLQLSEATPTAAYAEHYARIVAEKWTLRRLIQAAGEAMRLAYEE-AGSLDEILDTAGKKILEVALTKT--DTEARPMRELVHETFEHIEA-----------VRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRL-SEAPIYIDDTPDLTLMEVRARARRLVSQN-QVGLIIIDYLQLMSGP----NRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAEIIVGKQRNGPTGTVELQFHASHVRFNDL--------
6	HHPRED-g	3bgw_A	0.363	0.877	5.439	threading_6	-----------------------------NEYAEQAVLGSILTEPELIKECP--LTPEHFSPGKHFNIYFTMQDLDRKGQSVDFTSIAARVGEK--LPQLGGFGYLTELAASVASTTTFKQHCQTVSEYFQKRKAISIAQQIIENVN---------VIQEAVSELMEIEASGTD--DDDGSIDEALVTVYEEIESAD---G-NITGVPSGFTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDN-DDVVNLHSLEMGKKENIKRLIVTAGSINAQKIKAARFASEDWGKLSMAIGEIS-NSNINIFDKAGQSVNYIWSKTRQTKRKNP-GKIVMIDYLQLLEPAKANDSRTNQISQISRDLKKMARELDVVVIALSQLSRQVEQRQDKRPMLSDLRESGQLEQDADIIEFLYRDDYYDKESESKNIVEVIIAKHRDGPVGTVSLAFIKEYGNFVNLE-------
7	SP3	2r6aa	0.464	0.892	6.844	threading_7	------------------------RIPPQSIEAEQAVLGAVFLDPAALVPASEILIPEDFYRAAHQKIFHAMLRVADRGEPVDLVTVTAELAASEQLEEIGGVSYLSELADAVPTAANVEYYARIVEEKSVLRRLIRTATSIAQDGYTRED-EIDVLLDEADRKIMEVSQRKHS--GAFKNIKDILVQTYDNIEMLHNR-DGEITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLS-NAGIYIDDTPSIRVSDIRAKCRRLKQESG-LGMIVIDYLQLIQGS---GRRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQR---RPMMSDIRESGSIEQDADIVAFLYRDDYK-------NIIEIIIAKQRNGPVGTVQLAFIKEYNKFVNL--------
8	SAM-T99	2vyeA	0.468	0.898	6.744	threading_8	-------------------------IPPQSIEAEQAVLGAVFLDPTALTLASERLIPEDFYRAAHQKIFHAMLRVADKGEPVDLVTVTAELAALEQLEEVGGVSYLSELADSVPTAANVEYYARIVEEKSLLRRLIRTATSIAQDGYTRED-EIDVLLDEAERKIMEVSQRKHSG--AFKNIKDVLVQTYDNIEMLH-NRNGDITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGS-LSNAGIYIDDTPSIRVSDIRAKCRRLKQESG-LGMVVIDYLQLIQGSGRRENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD--PMMSDLRESGSIEQDADIVAFLYRDD--NKDSENKNIIEIIIAKQRNG----VQLAFIKEYNKFVN---------
9	MUSTER	2vyeA	0.470	0.898	3.387	threading_9	-------------------------IPPQSIEAEQAVLGAVFLDPTALTLASERLIPEDFYRAAHQKIFHAMLRVADKGEPVDLVTVTAELAALEQLEEVGGVSYLSELADSVPTAANVEYYARIVEEKSLLRRLIRTATSIAQDGYTRED-EIDVLLDEAERKIMEVSQRKHSG--AFKNIKDVLVQTYDNIEMLHNRNGD-ITGIPTGFTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSAQQLVMRMLCAEGNINAQNLRTGKLTPEDWGKLTMAMGSLSN-AGIYIDDTPSIRVSDIRAKCRRLKQESG-LGMVVIDYLQLIQGSGNRENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQD--PMMSDLRESGSIEQDADIVAFLYRDDNK--DSENKNIIEIIIAKQRNG----VQLAFIKEYNKFVN---------
10	SPARKS	2q6ta	0.476	0.887	7.249	threading_10	-------------------------IPPHSLEAEQSVLGSILLDSDVMDEVEGLLSPEAFYAEAHRKIYAAMQALRSQGRPVDLVTLSEELSRRGQLEEVGGTAYLLQLSEATPTAAYAEHYARIVAEKWTLRRLIQAAGEAMRLAYEEAG-SLDEILDTAGKKILEVALTKTDT--EARPMRELVHETFEH-----------IEAVRTGFKELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEMPAAQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLS-EAPIYIDDTPDLTLMEVRARARRLVSQNQ-VGLIIIDYLQLMSGP----NRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIYRDEYYNPHSEKAGIAEIIVGKQRNGPTGTVELQFHASHVRFNDL--------

Predicted Tertiary Structure


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TM-score=0.667 to 1q57A SCOP code=c.37.1.11	TM-score=0.654 to 1q57A SCOP code=c.37.1.11	TM-score=0.659 to 1q57A SCOP code=c.37.1.11	TM-score=0.660 to 1q57A SCOP code=c.37.1.11	TM-score=0.667 to 1q57A SCOP code=c.37.1.11