Template-based Modeling Results for DMSC_ECOLI

Submitted Primary Sequence

>Length 287
MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAVAS
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAVAS
CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAVAS
53201110010000000000000000000010213232311220100000000000000000002000011001001201101101100000000000000000100221020011000000000000000000100110320101101000000000000000000000010122212002000000000000000000010020120110021003202210000001000000000000002132232111000000000000200000000001010011134
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MGSGWHEWPLMIFTVFGQCVAGGFIVLALALLKGDLRAEAQQRVIACMFGLWVLMGIGFIASMLHLGSPMRAFNSLNRVGASALSNEIASGSIFFAVGGIGWLLAMLKKLSPALRTLWLIVTMVLGVIFVWMMVRVYNSIDTVPTWYSIWTPMGFFLTMFMGGPLLGYLLLSLAGVDGWAMRLLPAISVLALVVSGVVSVMQGAELATIHSSVQQAAALVPDYGALMSWRIVLLAVALCLWIAPQLKGYQPAVPLLSVSFILLLAGELIGRGVFYGLHMTVGMAVAS
1	MUSTER	3zuxA	0.123	0.934	0.959	threading_1	I-GKTFSLWAALFAAAAFFYIPWLLGIIMFGMGLTLKPSDFDILFK-----PKVVIIGVIAQFAIM--PATAWCLSKLLN---LPAEIAVGVILVGCGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLIQAAGMLMSIVKMVLLPIVLGLIVHKVL---SKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTYDAQKALTIEV-----QNSGLAAALAAAHFAVVAVPGALFSVHNISGSLLAT
2	SPARKS	2bkub	0.097	0.972	0.891	threading_2	DDWNVSMSAGACLQLFAQNC-GNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTY-YVHQALPSILNLMND--QSLQVKETTAWCIGRIADSVAESIDPQQHLPGVVQACLIGLPKVATNCSWTIINLVEQLA--EATPSPIYNFYPALVDGLIGAAN--RIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISA
3	PROSPECT2	1ee4a	0.118	1.000	1.574	threading_3	LNSDDMQEQLSATVKFRQILLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIIWALGNVADYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCWSVVSQALPTLAKDTETLVDACWAISYLQEAIQAVIDVRIPKRLVELLSHESTLVQTPALQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNILIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE
4	PPA-I	3zuxA	0.140	0.871	1.038	threading_4	FDILFKHPKVVIIGVIAQFAIMPATAWCLSKLLNLP-----------AEIAVGVILVGCCP-----GGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKV--LGSKTEKLTDALPLVSVAAIVLIIGAVVGA---SKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALT--IEVGMQN----SGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA----------
5	HHPRED-l	2vpz_C	0.196	0.819	5.270	threading_5	NAQEFWHWTNALHFVLVGLAGGVALLAALLHLKGDAEA---RRYT---LYALMLIALDLFILWA--ESPARFFTHIWHP-TSPIWWGAWGLGLGFLTGGLLYLG---KG----SQRALAWALLVFSLVALSYPGLALAVNLNRPLWNGL-MAGLFPLTALVLALGLAALLKSP--WALFPLRV---LAGASLLLAL---LYPL----TLPP-EARGH-LLEEAGF---WYGLFLLLGLGTF----WQERLA--PWAG---LLAAAG---LRALLAGQWQGL------
6	HHPRED-g	2vpz_C	0.208	0.822	6.115	threading_6	AQEFW-HWTNALHFVLVGLAGGVALLAALLHLKGDAEA---RRYT---LYALMLIALDLFILWA--ESPARFFTHIWHP-TSPIWWGAWGLGLGFLTGGLLYLG---KG----SQRALAWALLVFSLVALSYPGLALAVNLNRPLWNGL-MAGLFPLTALVLALGLAALL-K--SP--WALFPLRVLAGASLLLALLYP----LTL---PP--EARGHLLEEA-G--FWYGLFLLLGLGTF----WQERLA--PWAG---LLAAAG-LRALLVLAGQWQ--GL----
7	SP3	2yl4a	0.130	0.965	0.708	threading_7	LGLAYPERRRLAAAVGFLTMSSVIAPFFLGKIIDNPTVDYSDNLTRLCLGLSAVFLCGAAANAIRVYLMQTSGQRIVSLFSSILRQEV---AFFDTGELINRLSSDTALLGRSVENLSDGLRAGAQASVGISMMFFV-------SPNLATFVLSVVPPVSIIAVIYGRYLRKLTKVTQDSLAQATQLAEERIGVRTVRAGKEMTEIEKYASKVDHVMQLARKFGATGLSGNLIVLSVLYKGGLLMGSAHMTVGELSSFLMYAFWVGISIGGLSSFYSELMKGLGAGG
8	SAM-T99	2j0vB	0.120	0.463	0.551	threading_8	------------------------------------------------------------------------------------------------------------GSHMSVSKFIKCVTVGDGAVGKTCMLICYT-SNKFPTDYIPTVFDNFSANVAVDGQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLISKASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDDKGYLA---------------------------------------------
9	MUSTER	2vpyC	0.213	0.801	0.914	threading_9	AQEFWH-WTNALHFVLVGLAGGVALLAALLHLKGDA------EARRYTLYALMLIALDLFILWAE--SPAR-----FRFTHIWLTSPIWWGAWGLGLGFLTGGLLYLGKGSQ---RALAWALLVFSLVALSYPGLALAVNLNRPLW-NGLMAGLFPLTALVLALGLAALL------SPWALFPLRVLAGASLLLALLYP---------LTLPPEARGHLLEEAG---FWYGLFLLLGLGTFLAPWA-----LLAAAGLRALLVLAGQWQGL----------------
10	SPARKS	3m1ic	0.101	0.962	0.884	threading_10	ITRKWKLLP--------NDHRIGIRNFVVGMIISMCQDDEVFKTQKNLINKSDLTLVQILKQEWPQNWP-EFIPELIGSSSSVNVCENNMIVLKLLSEEVFDFQAKALHLKNSMSKFEQIFKLCFQVLEQGSSSSLIVATESLLRYLH-WIPYRYIYETNILELLS-TKFMTSPDTRAITLKCLTEVSNLDLIKRQTVLFFQNTLQQIATADLKATYANANGNDQSFLQDLAMFLTTYLARNRALLESDESLRELLLNAHQYLIQLRELFKTTLDYWHNLVADLFYE

Predicted Tertiary Structure


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TM-score=0.428 to 1pw4A SCOP code=f.38.1.1	TM-score=0.455 to 1j30A SCOP code=a.25.1.1	TM-score=0.698 to 1qgkA SCOP code=a.118.1.1	TM-score=0.709 to 1ialA SCOP code=a.118.1.1	TM-score=0.433 to 1cpcB SCOP code=a.1.1.3