Template-based Modeling Results for DDPA_ECOLI

Submitted Primary Sequence

>Length 516
MKRSISFRPTLLALVLATNFPVAHAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYPGNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLRVTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATAMQYNHDETKAKAEWDKVTSKPTSLTFLYSDNDPNWEPIALATQSSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQVFNINTMSK
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKRSISFRPTLLALVLATNFPVAHAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYPGNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLRVTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATAMQYNHDETKAKAEWDKVTSKPTSLTFLYSDNDPNWEPIALATQSSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQVFNINTMSK
CCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHCCCHHHHHHHHHHHHHEEECCCCCCCCCEEEECCCCEEEECCCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHCCCCCEEEEECCCEEEEEECCCCHHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECCCCCCCCCCCCEEEEEECCCHHHHHHHHHCCCCCEECCCCHHHHHHHHCCCCCEEEEECCCCEEEEEEECCCCCCCCHHHHHHHHHHHCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEEEECCCCCCEEECCCCCCEEEEEEEEC
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKRSISFRPTLLALVLATNFPVAHAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYPGNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLRVTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATAMQYNHDETKAKAEWDKVTSKPTSLTFLYSDNDPNWEPIALATQSSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQVFNINTMSK
543110010000000000000012122341100001212142001111221211100110022001123323312110001002102014331100010142030021220103001000211142231113103322202011411020102211110010000100010122003212332231112311001000002102421100011042113331302100010012110111102302000021011310320353331100211112000000013322131210020011001030002000211121020000310101222023132113101100240314301000000222311210010012003502020201101011012112312110000000110100110000001033322211212130210020032023222332114002200300132000000001100000143031010011232001112124
123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKRSISFRPTLLALVLATNFPVAHAAVPKDMLVIGKAADPQTLDPAVTIDNNDWTVTYPSYQRLVQYKTDGDKGSTDVEGDLASSWKASDDQKEWTFTLKDNAKFADGTPVTAEAVKLSFERLLKIGQGPAEAFPKDLKIDAPDEHTVKFTLSQPFAPFLYTLANDGASIINPAVLKEHAADDARGFLAQNTAGSGPFMLKSWQKGQQLVLVPNPHYPGNKPNFKRVSVKIIGESASRRLQLSRGDIDIADALPVDQLNALKQENKVNVAEYPSLRVTYLYLNNSKAPLNQADLRRAISWSTDYQGMVNGILSGNGKQMRGPIPEGMWGYDATAMQYNHDETKAKAEWDKVTSKPTSLTFLYSDNDPNWEPIALATQSSLNKLGIIVKLEKLANATMRDRVGKGDYDIAIGNWSPDFADPYMFMNYWFESDKKGLPGNRSFYENSEVDKLLRNALATTDQTQRTRDYQQAQKIVIDDAAYVYLFQKNYQLAMNKEVKGFVFNPMLEQVFNINTMSK
1	MUSTER	3m8uA	0.259	0.936	3.761	threading_1	----------------------------DKTFINCVSRSPTGFSPALVMDGISYNASQQVYNRLVEFK----RGSTDIEPALAESWTVSDDGLTYTFNLRKGVKFHSNRDFNADDVVFSFQRQLDPNHPYHNVSKALKSVEKVDMHTVKITLNRQDATFLASLGMDFISIYSAEYADKMLAAGKPETIDTTPIGTGPFLFAGYQVDQKSRYLAHKEYWKGKADIDRLIFEIVPDATARYAKLQAGACDLIDFPNAADLEKMKTDPKVNLHSQSGLNIAYIAFNTEKAPFDNVKVRQALNYAVDKNAIIDAVYRGAGVAAKNPLPPTIWGYNNEITGYEYSPEKAKQLLKEAGFENGFETDIWVASNPNPRRMAELVQSDWEKVGVKSKLVSYEWGDYIKRTKAGELTAGTYGWSGDNGDPDNFLSPLFGSENVG-NSNYARFKNPELDALLHKAVGLSDKAERAKIYEQAQVLLKEQAPWINVAHSINFAPTSKRVQDYKQSPFGYTYLYGTKLAD
2	SPARKS	3t66a	0.222	0.897	5.549	threading_2	----------------------------EKHIHFLFNVSTNSLDPH--VDMTYIPVRAGITETLVRVDEE----NVTIAPWLAESWD-STDGQHWTIKLREDVTFQNGKEMDAEAVKASLERALDESVAIENALK-IDEIEADG-YTLHITTKEPFPEFISELVNPNVSIIDV----------TEEDFTNHPVGTGPFALESFTPGSKLELVRYDEYWDGASKLDSVTFSFNEDASARSLALESGQADIVYRPEVESIETLQANEGIMVEATETFRTHNLTMNLDRDSLKDVNVRRAVDVLLDRQEIVDTIMLGYAEVADGPFIPT-LPFAPSYEKKETGTDIAIQYLEEAGYTLEHFTVLTYGSRAELPLIAQVFQSNAKQIGIEVEIRQIEVPEEYMASNRDWDLITYSNVTSPRGDAGYYLNATYHPTG---ALNFSSVNDPELTGIIDELNRTVDQDVRAKLTEQAAAYIDEQKIHSFLIHPSAVVAYDENVKNWVTTRSEYYMITQLDV--
3	PROSPECT2	3tpaA	0.276	0.934	5.891	threading_3	-----------------------------NTLVNCIATAPMKLSPAITNDANDFNASQQVYNRLVEFKA----GKIEVEPGLAERWEISEDGLVYTFYLRQNVKFHSNKPLNADDVVFSFQRQADKNHPYHNVSAGLKSVEKVDDYTVKITLNKPNTPFITTVAMDFLSIYSKEYADQLLAQGKPETLDQQPIGTGPFIFQTNQTDHAVRYTANVDYWKGKADIERLIFSITPDAGTRYAKLKAGECDVIDFPNISDIAQMKKDPQINLLEREGLNLAYIGLNTTKPELNNVKVRQALHHATDKKAIVDAVYQGGGTVATNPFPDAVLGYNPHLPQYEFNLEKAKALLAEAGYPNGFETEIWVQPVPNPRRTAEIIQADWAKIGVKAKLVTHEWADFNKRTREGEFAAGTYGWTSRNGDPDNFLFPLFSQANIP-GTNYSRWTDEKFEALLASAAQIQDTQTRAKLYQQAVEIFQQNSPIIPFAHSINYVPLNKRVQGFVQNPFGYTAFYGVSLKL
4	PPA-I	3m8uA	0.259	0.936	5.084	threading_4	----------------------------DKTFINCVSRSPTGFSPALVMDGISYNASQQVYNRLVEFK----RGSTDIEPALAESWTVSDDGLTYTFNLRKGVKFHSNKDFNADDVVFSFQRQLDPNHPYHNVSKALKSVEKVDMHTVKITLNRQDATFLASLGMDFISIYSAEYADKMLAAGKPETIDTTPIGTGPFLFAGYQVDQKSRYLAHKEYWKGKADIDRLIFEIVPDATARYAKLQAGACDLIDFPNAADLEKMKTDPKVNLHSQSGLNIAYIAFNTEKAPFDNVKVRQALNYAVDKNAIIDAVYRGAGVAAKNPLPPTIWGYNNEITGYEYSPEKAKQLLKEAGFENGFETDIWVASNPNPRRMAELVQSDWEKVGVKSKLVSYEWGDYIKRTKAGELTAGTYGWSGDNGDPDNFLSPLFGSENVG-NSNYARFKNPELDALLHKAVGLSDKAERAKIYEQAQVLLKEQAPWINVAHSINFAPTSKRVQDYKQSPFGYTYLYGTKLAD
5	HHPRED-l	3m8u_A	0.255	0.934	3.524	threading_5	----------------------------DKTFINCVSRSPTGFSPALVMDGISYNASQQVYNRLVEFKRGS----TDIEPALAESWTVSDDGLTYTFNLRKGVKFHSSRDFNADDVVFSFQRQLDPNHPYHNFSTLLKSVEKVDMHTVKITLNRQDATFLASLGMDFISIYSAEYADKMLAAGKPETIDTTPIGTGPFLFAGYQVDQKSRYLAHKEYWKGKADIDRLIFEIVPDATARYAKLQAGACDLIDFPNAADLEKMKTDPKVNLHSQSGLNIAYIAFNTEKAPFDNVKVRQALNYAVDKNAIIDAVYRGAGVAAKNPLPPTIWGYNNEITGYEYSPEKAKQLLKEAGFENGFETDIVQPVNPNPRRMAELVQSDWEKVGVKSKLVSYEWGDYIKRTKAGELTAGTYGWSGDNGDPDNFLSPLFGSENVG-NSNYARFKNPELDALLHKAVGLSDKAERAKIYEQAQVLLKEQAPWINVAHSINFAPTSKRVQDYKQSPFGYTYLYGTKLA-
6	HHPRED-g	1dpe_A	0.268	0.934	3.180	threading_6	-----------------------------KTLVYCSEGSPEGFNPQLFISGTTYDASSPLYNRLVEFK----IGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNKELNADDVVFSFDRQKNAQNPYHKVSGGISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKEAGLEKGFSIDLWAPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATEFSCAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE-
7	SP3	3t66a	0.216	0.897	5.695	threading_7	----------------------------EKHIHFLFNVSTNSLDPH--VDMTYIPVRAGITETLVRVDEEN----VTIAPWLAESWD-STDGQHWTIKLREDVTFQNGKEMDAEAVKASLERALDESVAIENALK--IDEIEADGYTLHITTKEPFPEFISELVNPNVSIIDVTE----------EDFTNHPVGTGPFALESFTPGSKLELVRYDEYWDGASKLDSVTFSFNEDASARSLALESGQADIVYRPEVESIETLQANEGIMVEATETFRTHNLTMNLDRDSLKDVNVRRAVDVLLDRQEIVDTIMLGYAEVADGPFIPT-LPFAPSYEKKETGTDIAIQYLEEAGYTLELHFTVLYGSRAELPLIAQVFQSNAKQIGIEVEIRQIEVPEEYMASNRDWDLITYSNVTSPRGDAGYYLNATYHPT---GALNFSSVNDPELTGIIDELNRTVDQDVRAKLTEQAAAYIDEQKIHSFLIHPSAVVAYDENVKNWVTTRSEYYMITQLDV--
8	SAM-T99	1dppA	0.263	0.934	4.469	threading_8	-----------------------------KTLVYCSEGSPEGFNPQLFTSGTTYDASVPLYNRLVEF----KIGTTEVIPGLAEKWEVSEDGKTYTFHLRKGVKWHDNRELNADDVVFSFDRQKNAQNPYMGLPELISEVKKVDDNTVQFVLTRPEAPFLADLAMDFASILSKEYADAMMKAGTPEKLDLNPIGTGPFQLQQYQKDSRIRYKAFDGYWGTKPQIDTLVFSITPDASVRYAKLQKNECQVMPYPNPADIARMKQDKSINLMEMPGLNVGYLSYNVQKKPLDDVKVRQALTYAVNKDAIIKAVYQGAGVSAKNLIPPTMWGYNDDVQDYTYDPEKAKALLKEAGLEKFSIDLWAMPYNPNARRMAEMIQADWAKVGVQAKIVTYEWGEYLKRAKDGEHQTVMMGWTGDNGDPDNFFATLFSCAASEQGSNYSKWCYKPFEDLIQPARATDDHNKRVELYKQAQVVMHDQAPALIIAHSTVFEPVRKEVKGYVVDPLGKHHFENVSIE-
9	MUSTER	3tpaA	0.276	0.934	3.677	threading_9	-----------------------------NTLVNCIATAPMKLSPAITNDANDFNASQQVYNRLVEFK----AGKIEVEPGLAERWEISEDGLVYTFYLRQNVKFHSNRPLNADDVVFSFQRQADKNHPYHNVSAGLKSVEKVDDYTVKITLNKPNTPFITTVAMDFLSIYSKEYADQLLAQGKPETLDQQPIGTGPFIFQTNQTDHAVRYTANVDYWKGKADIERLIFSITPDAGTRYAKLKAGECDVIDFPNISDIAQMKKDPQINLLEREGLNLAYIGLNTTKPELNNVKVRQALHHATDKKAIVDAVYQGGGTVATNPFPDAVLGYNPHLPQYEFNLEKAKALLAEAGYPNGFETEIWVQSNPNPRRTAEIIQADWAKIGVKAKLVTHEWADFNKRTREGEFAAGTYGWTSRNGDPDNFLFPLFSQANIP-GTNYSRWTDEKFEALLASAAQIQDTQTRAKLYQQAVEIFQQNSPIIPFAHSINYVPLNKRVQGFVQNPFGYTAFYGVSLKL
10	SPARKS	1xoca	0.230	0.934	5.303	threading_10	------------------------KPQQGGDLVVGSIGEPTLFNSLYSTDDASTDIENMLYSFLTKTDEKLN-----VKLSLAESIKELDGGLAYDVKIKKGVKFHDGKELTADDVVFTYSVPLSKDYERGSTYEMLKSVEKKGDYEVLFKLKYKDGNFYNNAL-DSTAILPKHILGNVPIAEENEFNRKKPIGSGPFKFKEWKQGQYIKLEANDDYFEGRPYLDTVTYKVIPDANAAEAQLQAGDINFF-NVPATDYKTAEKFNNLKIVTDLALSYVYIGWNEKNELFKDKKVRQALTTALDRESIVSQVLDGDGEVAYIPESPLSWNYPKDVPKFEYNEKKAKQMLAEAGWKDTSFTLKTNQGNKVREDIAVVVQEQLKKIGIEVKTQIVEWSALVEQMNPPNFDAMVMGWSLST-FPDQ--YDIFHSSQIKKGLNYVWYKNAEADKLMKDAKSISDRKQYSKEYEQIYQKIAEDQPYTFLYYPNNHMAMPENLEGYKYHPKRDLNIEKWWLAK

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.905 to 1dppA SCOP code=c.94.1.1	TM-score=0.903 to 1dppA SCOP code=c.94.1.1	TM-score=0.851 to 1uqwA SCOP code=c.94.1.1	TM-score=0.880 to 1uqwA SCOP code=c.94.1.1	TM-score=0.905 to 1dppA SCOP code=c.94.1.1