Template-based Modeling Results for DCUD_ECOLI

Submitted Primary Sequence

>Length 455
MFGIIISVIVLITMGYLILKNYKPQVVLAAAGIFLMMCGVWLGFGGVLDPTKSSGYLIVDIYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAVAVIATTMSIEWGILETNSIFAAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRAFDKKDKNINHEQAEQKALDNVPPLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPITAVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIATITLFY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFGIIISVIVLITMGYLILKNYKPQVVLAAAGIFLMMCGVWLGFGGVLDPTKSSGYLIVDIYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAVAVIATTMSIEWGILETNSIFAAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRAFDKKDKNINHEQAEQKALDNVPPLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPITAVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIATITLFY
CHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCEECHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFGIIISVIVLITMGYLILKNYKPQVVLAAAGIFLMMCGVWLGFGGVLDPTKSSGYLIVDIYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAVAVIATTMSIEWGILETNSIFAAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRAFDKKDKNINHEQAEQKALDNVPPLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPITAVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIATITLFY
21010000000000010002313120000000000000001012211233241211100000210020013201100000000000010032010020001001200330211100000000001000100110100000000000000020100200000000000002101121100100310313000000211010000000000000000220023334322332122322332222110001000001000011113212230101000000000000000200243313300210210020002000100000000200130010010020003003312200100100100010000211110100000001000300220302001000001001101210011000000002012011110011100100000000000000112
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFGIIISVIVLITMGYLILKNYKPQVVLAAAGIFLMMCGVWLGFGGVLDPTKSSGYLIVDIYNEILRMLSNRIAGLGLSIMAVGGYARYMERIGASRAMVSLLSRPLKLIRSPYIILSATYVIGQIMAQFITSASGLGMLLMVTLFPTLVSLGVSRLSAVAVIATTMSIEWGILETNSIFAAQVAGMKIATYFFHYQLPVASCVIISVAISHFFVQRAFDKKDKNINHEQAEQKALDNVPPLYYAILPVMPLILMLGSLFLAHVGLMQSELHLVVVMLLSLTVTMFVEFFRKHNLRETMDDVQAFFDGMGTQFANVVTLVVAGEIFAKGLTTIGTVDAVIRGAEHSGLGGIGVMIIMALVIAICAIVMGSGNAPFMSFASLIPNIAAGLHVPAVVMIMPMHFATTLARAVSPITAVVVVTSGIAGVSPFAVVKRTAIPMAVGFVVNMIATITLFY
1	SPARKS	2xwub	0.122	0.958	1.197	threading_1	TSSLTLTFWYTLQDDILSFEAEKAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWLGAELLSNLYDKLGRLLTSWQHTEALLYGFQSIAETIDVNYDVVPGLIGLIPRISNVQLADTVMFTIGALSEWLADHPVMINSV-----LPLVLHALGNPELSVSSVSTLKKICRECKYDLPPYAANIVAV-SQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNISPYIQQLEKLAEEIPNPSNKLAIVHILGLLSNLFTTLDISHPN----PVVVVLQQVFQLIQKVLSKWLVEAVCAIFEKSVKTLLDDFAPM--VPQLCEMLGRMYSTISALDLTRQLVHIFAHEPAHFPPIEALFLLVTSVTL----TLFQQGPRDHPDIVDSF---MQLLAQALKRKPDLFLCERLDVKAVFQCAVLALKFPEAPTVKASCGFFTELLVESVGKVVQED
2	PROSPECT2	1jdha	0.088	0.949	2.115	threading_2	AIPELTKLLAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND------------VETARCTAGTLHNLSHHGLLAIFKSGGIPALVKMLGSPFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILA---YGNQESKLIILALVNIMRTYTYEKLLWTTSRVVCSSNKPAIVEAGGMQALGLHLLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKHWPLIKATVGLIRNLALCPANHAPLRE--------QGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIIPLFVQLLYSPIEQRVAAGVLCELAQDKEAAIEAEGATAPLTELLTYAAAVLFRMS
3	PPA-I	1b3uA	0.093	0.943	1.278	threading_3	PLESLATVVRDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASQDSVRLLAVEACVNIAQLL--PQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQ--NLMK-----DCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG-------------KDNTIEHLLPLFLAQLKDECRLNIISNLDCVNEVIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFD----EKLNSLCMAWLVDHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAANVRFNVAKSL
4	SPARKS	2bkub	0.099	0.956	1.159	threading_4	AAAQLIAAIADIELMKIMVDNTGAQPENVKRASLLALGYMCESADALVSS-------SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKEREGERNYLMQVVCETQAED-IEVQAAAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTI---CEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHI-LEPVLEFVEQNITAD--------NWRNREAAVMAFGSIMDGPDKVQRTYYVHQLPSILNLMNDQLQVKETTAWCIGRIADSVAESQHLPGVVQACLIGQDHPKVATNCSWTIINLVEQLAEATPSPIYNYPALVDGLIGAANRIDNEFNARASAFSALTTMVESISTFVMDKLGSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS
5	PROSPECT2	1b3ua	0.079	0.976	1.984	threading_5	SLYPIAVLINSIKKLSTIALALGVERTRLLPFLVLLALAEQLGTFTTLVGGPEYVHCLLPPLDKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDLAVEACVNIAQLLPQEDLEALVMPTLRQAAVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADC---------RENVIMSQILPCIKELVSDANQHALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEV--RLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGHVYAIREAATSNLKKLVEKFGKRMTTLFCINVLSEVCGQDITTKHMLPTVLRMAAKSLQKIGPIL
6	PPA-I	1xm9A	0.056	0.866	1.263	threading_6	YLSEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPN-------------QNVQQAAAGALRNLVFRSTTNKLETRRQN-----------GIREAVSLLRRTGNAEIQKQLTGLLWNLSSKEELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLS---SADAGRQTMRNYSG--------------LIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPT----------RYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEK-----GLPQIARLLQSGN-----SDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSASPKAAEAARLLLSDMWSS
7	PROSPECT2	1ee4a	0.078	0.870	1.957	threading_7	ELPQMTQQLEQLSATVKFRQHRPPIDVVIQAGVVPRLVEFMRENQP------------EMLQLEAAWALTNIASGTSAQTKVVV-------DADAVPLFIQLLYTGSVEVK--------EQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLQEAIQAVIDVR-------IPKRLVELLSHESTLVQTPALRAVGNI----------VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVI-----------DANLIPPLVKLLEVAE-DKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRI---IEVTLDALENILKMGEADKEARGLNINENADFIEKAGMEKIFNCQEKAYKIIETYF
8	PPA-I	3o7pA	0.100	0.879	1.188	threading_8	-------------------RSYIIPFALLCSLFFLWAVANNLNDILLPQFQQAFFQAGLIQSAFYFGYFIIPI--PAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGGHFRLNLAQT---FASFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVPYMIIVAIVLLVALLIMLTKFPALQSDNHSDAKQGSFSASLSRLARIRHWRWAVLAQF---------CYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCSAFMSIQY-----PTIFSLGIK------NLGQDTKYGSSFIVMTIIGGGIVTPVMGFVSDAAGNIPTA-----------ELIPALCFAVIFIFARF
9	PROSPECT2	1w63A	0.103	0.941	1.914	threading_9	MCAAIRSSFNVAKLLYMHMLGYPAHFGQLECRIGYLGAMLLLDERQ---------DVHLLMTNCIKNDLNHSTQFVQGLALCTLGCRDLAGEVKAALCAVHVIRKVPELMEMFLPAHGVLHTSVVLLTEMCERSPDMLAHFVPQLVRILKNSGISDPFLQVRILRLLRILGRNDDDSSEAMNDI----LAQVATNTETSKNVGNAILYETVLTIMDIKSESGLRVLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNAVQRH--------RSTIVIKRRAMELSFALVNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLTTA-----GSYVRDDAVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVA-AWCIGEYGDLLVSGQCEEEEPIQVTEDEVLDILESVLISVTRGYALTAIMKLSTRF
10	PPA-I	1kpkA	0.119	0.848	1.173	threading_10	KTPLAILFMAAVVGTLVGLA-----AVAFDKGVAWLQNQRMGALVHTADN--------------YPLLLTVAFLCSAVLAMFGYFLVRKYAPEAGGSGIPEIEGALEDQRPVRWWRVLPVKFFGGLGTLGGGMTVQIGGNIGRMVLDIFRLKGDETLLATGAAAGLAAAFNAPLAGILFIIEEMRPQF-------RYTLISIKAVFIGVIMSTIMYRIFNHEVALID-----VGKLSDAPLNT------LWLYLILGIIF------------GIFGPIFNKWVLGMQDLLHRVHGGN-------------ITKWVLMGGAIGGLCGLLGFATSGGGFNLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASIRAPLTGIILVLEMTDNYQ-------LILPMIITGLGATLLAQFTGG

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.549 to 2q6hA SCOP code=f.54.1.1	TM-score=0.621 to 1m8xA SCOP code=a.118.1.8	TM-score=0.659 to 1ialA SCOP code=a.118.1.1	TM-score=0.782 to 1b3uA SCOP code=a.118.1.2	TM-score=0.898 to 1kpkA SCOP code=f.20.1.1