Template-based Modeling Results for DCUB_ECOLI

Submitted Primary Sequence

>Length 446
MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQPGKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLGNVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREYVYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMFMLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLGEMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYILPTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQPGKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLGNVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREYVYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMFMLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLGEMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYILPTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL
CCHHHHHHHHHHHHHHHHHHCCCCEEHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHEEEECCCCCCCEEEEEECCCCCCCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQPGKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLGNVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREYVYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMFMLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLGEMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYILPTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL
33100000000000000033111000000000000101003132140101000000000000000211100200020012004411320000000000000000010100010010002002334232421110000001001100000000000000002122313303001000000000000000000001121331331330131032331332122322222344233121100000000000000101123121112232122110000000000000000021312202312002100100000000000010001000210120003004200000000000002001121001000000001010111000000000000000111100000010132111300100000101010000000000001000101113
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLFTIQLIIILICLFYGARKGGIALGLLGGIGLVILVFVFHLQPGKPPVDVMLVIIAVVAASATLQASGGLDVMLQIAEKLLRRNPKYVSIVAPFVTCTLTILCGTGHVVYTILPIIYDVAIKNNIRPERPMAASSIGAQMGIIASPVSVAVVSLVAMLGNVTFDGRHLEFLDLLAITIPSTLIGILAIGIFSWFRGKDLDKDEEFQKFISVPENREYVYGDTATLLDKKLPKSNWLAMWIFLGAIAVVALLGADSDLRPSFGGKPLSMVLVIQMFMLLTGALIIILTKTNPASISKNEVFRSGMIAIVAVYGIAWMAETMFGAHMSEIQGVLGEMVKEYPWAYAIVLLLVSKFVNSQAAALAAIVPVALAIGVDPAYIVASAPACYGYYILPTYPSDLAAIQFDRSGTTHIGRFVINHSFILPGLIGVSVSCVFGWIFAAMYGFL
1	PROSPECT2	1gw5b	0.083	0.946	1.915	threading_1	KEKRKEAVKKVIAAMTVGKDVSSLFPDVLVYLYLMNYAKSQPDMAIMAVNSFVIRALAVRTMGCIRVDKITEYLCEPLRKCLKDEDPYVRKTAEDQGFLDSLRDLIAMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR-EAQSICERVTPSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGE-------------PEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT---KVNYVVQEAIVVIRDIFLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTA-------IVKLFLKKPSETQELVQQVLSIEPTLLDELICHIV
2	PPA-I	1kpkA	0.119	0.868	1.470	threading_2	ERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYIPEIEGALEDQRPVRVLPVKFFGGLGTLGGGMVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFAPLAGILFIIEEMRPQFRYTLIS----------IKAVFIGVIMSTIMYRIFN---------------HEVALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNITKWVLMGGAIGGLCGLLGFVGFNLIPIATAGN-FSMGMLVFIFVARVITTLLCFSSGAPGGIFAPMLALGTVLGTAFGMVAVELFPQYHLEAGTFAIAGMGALLAASAPLTGIILVLEM--------------------TDNYQL-------------ILPMIITGLGATLLAQFTGGK
3	HHPRED-g	1ots_A	0.130	0.809	1.039	threading_3	ERDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRLVHTADNYPLLLTVFLCSAVLAMFGFLPEAGGIPEIEG----ALEDQRPVRVLPVKFFGGLGTLGG--GMVLGREGPTVRMVLDIFRLKGDHTLLATGAAAGLAAFNAPLAGILFIIE-EM------RPQFR---YTLISIKAVFIGVIMSTIMYRINHEVA-------------LIDVGKL--S------DAPL--NTLWLYLILGIIFGIFGPIFNKMQDLLHR--VHGGNITKWMGGAIGGLCGLLGF--------------------------VAPATSGGGF-NLIPIA---TAGNFSMGMLVFIFVARVITT----------LLCFSSGAPPMLALGVLGTAFGMVLYHLEAGTFAIAGMGAAASIRALEMTDNYQLILPMI----ITGLGATLLAQFTGGK
4	PROSPECT2	1jdha	0.088	0.870	1.798	threading_4	QVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQN-----TNDVETARCTAGTLHGLLAIFKSGGIPALVKMLHNLLLHQEGAKMAVRLITTDCLQILAYGNQESKLGPQALVNIMRTYTYEVCSSNKPAIVEAGGMQASQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLDINVVTCAAGILSNLTCNNY----KNKMMVCQVGGIEALVRTVLRAGDR-------EDITEPAICALRHL--------------TSRHQEAEMAQNAVRLHYGLPVVV------KLLHPPSHWPLIKATVGLIRNLALCPANHAPLIPRLVQLLVRAHQDTQEEIVEGCTGALHILARDVHNRIVIRGVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA----------------------EGATAPLTELVATYAAAVLFRMS
5	PPA-I	3zuxA	0.110	0.650	1.063	threading_5	FIGKTFSLWAALFAAAAFFAPDTFKWAGWLLGIIMFGMGLTLKPSDFPKVVIIGVIAQFAIMPATAWC--LSKLLNLP--------------AEIAVGVILVGCCPGGTASNVMTYLARG------------NVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLE---IQAAGMLMSIVKMVLLPIVLGLIVHKVLGS----------------KTEKL---------------TDALPLVSVAAIVLIIGAVV-----------------GASKGKIMESGLLIF-----AVV----------VLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMQN---SGLAAALAAAHFAAAPVVAVPGALFSVWHNISGSLLATYWAAKA-----------------------------------------------------------
6	PROSPECT2	1ejlI	0.101	0.843	1.724	threading_6	LESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFL----GKTDCSPIQFESAWALTQTKAVVDGGAIPAFISLLAHISEQ-----------AVWALGNIAGDG-------SAFRDLVIKHGAID--PLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVPEVLADSCWAISYLTDG-----PNERIEMVVKKGVVPQLV--------KLLGATELPIVTPALRAIGNIV---------------TGTDEQTQKVIDAGALAVFPSLLTNPKTNI------QKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTGTVEQIVYLVIEPLMNLAKDTKIIQVILDAIS----------NIFQAAEKLGETEKLSIMIEECGGLIEALQRESVYKASLNLIEKYFS--
7	PPA-I	3dh4A	0.102	0.857	1.035	threading_7	LKTILAVFWISLYIFVNLTS-------VLYLGGLALETILGIP--------LMYSILGLALFALVYSIVVWTDVIQVFFLVLGG--------FMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILNLPGIAVLIGGLWVANLYYWGFNQYIIQRTLAAKSVSQKGIVFAAFLKLIVPFLVVLPGIAAYVIT-------SDPQLMASLGDIAATNLPSAANADKATQFLPV---GVKGVVFAALAAAIVSS------------------LASMLNSTATIFTMDIPDSGDHKLVNV------GRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLMLYTLLFTMVVIAFTSLSTSINDD------DPKGISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVLYK-
8	PROSPECT2	1ee4a	0.077	0.818	1.705	threading_8	QELMTQQLQLSATVKFRQILSREHRPPIDVVIQAVVPRLVEFMRENQPEMLQLEAAWALTQTKVVVDADAVPLFIQLLYNVAGDSTDYRDYVLNAMEPILGLFNSNKSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVQTPALRAVGNIVTGND----LQTQVVINAGVLPALR---------LLLSSPKENIKKEACWTISNI-----------------TAGNTEQIQAVIDANLIPPLV---KLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQIKPLCDLLEIADNRIIEVTLDALENIL-------KMGEADKEARGLNINENADFIEK--------------------------------------AGGMEKIFNCKAYKIIETYF---
9	PPA-I	2fozA	0.112	0.740	1.029	threading_9	MASLSRFRGCLAGALLGDCVGSFAHDTVDLTSVLRHVQSLEPDPEALYYT-DDTAMARALVQSLLAKEADEVDMAHRFAQEYKKDPDR--GYGAGVVTVFKKLLNPK-----CRDVFEPARAQFNGKGSYGNGGAMRVAGISLAYSSVQDVQKFARLSAQLTHAS--------------SLGYNGAILQALAVHLALQGESSSEHFLKQLLGHMEDLEGDAQSVLDARELGMEERPYSSRLKKIGELLDQASVTREEVVSELGNGIAAFESVPTAIYCFLRCME-----PDPEIPSAFNSLQRTLIYSISLGGIATMAGAIAGAYYDQVPESWQQSCEGYEETDILAQSLHRVFQKS-----------------------------------------------------------------------------------------
10	PROSPECT2	3a6pA1	0.062	0.908	1.657	threading_10	AMLCEQLVKAVTVMMFKEKCPI-----------CVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNGMSRLEKVYLKNSVME--------------LIANGTLNILHIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLAAECLLIAV----------SRKGKLEDRKPLMVLFGDVAMHYI----LSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDV--ETPSNFGKYLESFLAFTTHPSQFLRSSTQMTWGALLSRDPLLLAIIPKYLMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLACRLDPKTSFQMAGEWL

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.850 to 1kpkA SCOP code=f.20.1.1	TM-score=0.587 to 2vglB SCOP code=i.23.1.1	TM-score=0.804 to 1kpkA SCOP code=f.20.1.1	TM-score=0.762 to 1kpkA SCOP code=f.20.1.1	TM-score=0.825 to 1pw4A SCOP code=f.38.1.1