Template-based Modeling Results for DCUA_ECOLI

Submitted Primary Sequence

>Length 433
MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGNIPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFAGTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGHGISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIEIKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVICKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLAVIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQMDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGNIPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFAGTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGHGISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIEIKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVICKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLAVIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQMDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML
CCHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCEEEEHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCEECCCCCCCEEEEEECCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGNIPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFAGTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGHGISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIEIKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVICKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLAVIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQMDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML
4201000000000000031101000000000000000020322301010000000000000002111002000200220044113100000000000000000101000100100020033332312211100000010111000000000000000222201112000000000000000000001112224223122023213322232413432324221310011000000000110113222211234321301200000000000000000213132023010020000000000000000100011003101300030031000000000000000110210002000000010201110000000000100001111000000101321112000000101010100000000000010001122
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLVVELIIVLLAIFLGARLGGIGIGFAGGLGVLVLAAIGVKPGNIPFDVISIIMAVIAAISAMQVAGGLDYLVHQTEKLLRRNPKYITILAPIVTYFLTIFAGTGNISLATLPVIAEVAKEQGVKPCRPLSTAVVSAQIAITASPISAAVVYMSSVMEGHGISYLHLLSVVIPSTLLAVLVMSFLVTMLFNSKLSDDPIYRKRLEEGLVELRGEKQIEIKSGAKTSVWLFLLGVVGVVIYAIINSPSMGLVEKPLMNTTNAILIIMLSVATLTTVICKVDTDNILNSSTFKAGMSACICILGVAWLGDTFVSNNIDWIKDTAGEVIQGHPWLLAVIFFFASALLYSQAATAKALMPMALALNVSPLTAVASFAAVSGLFILPTYPTLVAAVQMDDTGTTRIGKFVFNHPFFIPGTLGVALAVCFGFVLGSFML
1	PROSPECT2	1gw5b	0.064	0.942	1.807	threading_1	KKEKRKEAVKKVIAAMTVGKDV-------SSLFPDVVNCMQTDNLELKKLVYYLMNYAKSQPDMAIMAVNSFVKDTEYLCEPKDEDPYVRKTAAVCVAKLHDINAMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERSAVVLSAVKVLMKFLELLPKDSDYYNMLLKKLAPPLVTLLSGE--------PEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQT---KVNYVVQEAIVVIRDIFLDEPDARAAMIWIVGEYAERIDNADELLESFLEGFHDESTQVQLTLLTA-------IVKLFLKKPSETQELVQQVLSIEPTLLPPNAFV
2	PPA-I	1kpkA	0.105	0.882	1.561	threading_2	RDKTPLAILFMAAVVGTLVGLAAVAFDKGVAWLQNQRMGALVHTADNYPLLLTVAFLCSAVLAMFGYFLVRKYAIPEIELEDQRPVRVLPVKFFGGLGTLGGGMVQIGGNIGRMVLDIFRLKGDEARHTLLATGAAAGLAAAFAPLAGILFIIEEMRPQFRYTLIS-----IKAVFIGVIMSTIMYRIFNHEV----------ALIDVGKLSDAPLNTLWLYLILGIIFGIFGPIFNKWVLGMQDLLHRVHGGNI----TKWVLMGGAIGGLCGLLGFVAPATSGGGF---NLIPIATAGNFSMGMLVFIFVARVITTLLCFSSGAPGG--IFAPMLALGTVLGTAFGMVAVELFP---QYHLEAGTFAIAGMGAL-----------LAASILEMTDNYQL-------------ILPMIITGLGATLLAQFTG
3	PROSPECT2	1jdha	0.099	0.910	1.687	threading_3	AVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLREGLLAIFKSGGIPALVKMLHNLLLHQEGAKMAVRLITTDCLQILAYGNQESKLIIQALVNIMRTYT--YEKLLWTTSRVLKVLSVCSSNKPAIVGMQALGLHLTDP---------SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDRRHLTSRHQEAEMAQNAVRLHYGLPVVV------KLLHPPSHWPLIKATVGLIRNLALCPANHAPLIPRLVQLLVRAHQDTQEEIVEGCTGALHILARDVHNRIVIRGVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIEA----------------------EGATAPLTELLYAAAVLFRMS
4	PPA-I	3zuxA	0.142	0.684	1.143	threading_4	IGKTFSLWAALFAAAAFFAPDTF-----------------KWAGPYIPWLLGIIMFGMGLTL--------------------KPSD---FDILFKHPKVVIIGVI-AQFAIMPATAWCLSKL-----LNLPAEIAVGVILVGCCPGGTASNVMTYLA---RGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEM-----------------------------------LEIQAAGMLMSI-------------------VKMVLLPIVLGLIVHKVLGSKTEKLTDA----LPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGM--QNSGLAAALAAAHF-----AAAPVV-----------------------AVPGALFSVWHNISGSLLATYWA
5	PROSPECT2	1ejlI	0.066	0.843	1.672	threading_5	ESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLG---KTDCSPIQFESAWALTQTKAVVDGGAIPAFISLLAHISEQ-----------AVWALGNIAGDGSAFRDLIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNVEQILPTLVRLLHHND-----------PEVLADSCWAISYL-------TDGPNERIEMVVKK---GVVPQLVKLLGATELPIVTPALRAIGNI---------------VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQ--------KEATWTMSNITAGRQDQIQQVVNLVPFLVGVLSKADFKTQKEAAWAITNYTGTVEQIVYLVIEPLMNLAKDTKIIQVILDAIS----------NIFQAAEKLGETEKLSIMIEECGGLIEALQRESVYKASLNLIEKYFS
6	PPA-I	1pw4A	0.131	0.827	1.037	threading_6	WQIFLGIFFGYAAYYLVRK-----------NFALAMPYLVEQGFSRGDLGFALSGISIAYGFSKFIMGSDRS----------NPRVFLPAGLILAAAVMLFMGFGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAAL-------YMPAFCAILVALFAFAMMRDTP-----------QSCGLPPIEEYKNDTAKPNKLLWYIAIANVFVYLLRYGILDWSPTLKEVKHFALDKSSWAYFLYEYAGIPGTL---LCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWNPTVDMICMIVIGFLIYGPVMLIGLHALELAPKAAGTAAGFTGLFGYLGVAASAIVGYTVDFFGWDGG---------------------------------FMVMIGGSILAVILLIVVM
7	PROSPECT2	1ee4a	0.078	0.831	1.660	threading_7	QEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMR---ENQPEMLQLEAAWALTQTKVVVDADAVPLFIQLLYNVAGDSTDYRDYVLNAMEPILGLFNSNKSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVEL-----------------------------------LSHESTLVQTPALRAVGNI----------------VTGNDLQTQVVINAGVLPALRLLLSSPKENI-----------KKEACWTISNITAGNTEQIQAVIDPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNE-------NDKIYEKAYKIIET-YF
8	PPA-I	3dh4A	0.099	0.836	1.025	threading_8	IFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIVVWDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHIAVLIGGLWVANLYYWGFNQ----------------------------YIIQRTLAAKSVSEAQKGIVFAA---------FLKLIVPFLVVLPGIAAYVITSD--------PQLMASLGDIAATNLPSAANATQFLPVGVKGVVFAALAAAIVS-------------------SLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIACLIAPMLGGIGQAFQYIQEYTGLVGILAVFLLGLFWKKTTSKGAIIGVVASIPFALFLKYTLLFTMVVIAFTSLSTSINDDDPKGISVTSSMFV-------TDRSFNIAAYGIMIVLAVLYTLFWVLY
9	PROSPECT2	1gw5a	0.107	0.887	1.578	threading_9	DGYSKKKYVCKLLFIFLLGHDIDFGHMEAVNLLYLFISVLVNSNSELIRLINNAIKGLALHCIANVGSREMAEAFAGEIPKVAGDTMDSVKQSAALCLLRLYRTSPDLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLTECLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHD---------------SEPNLLVRACLALESMCTLASSEFSHEAVKTHILKTERDVSVRQRAVDLLYAMCDRSNAQQIVAEMLSYLETADYIVLKVAILAEKYAVDYTWYVDTILNLIRIAGVSEEVWYRVIQIVINR----------------------------------DDVQGYAAKTVFEALLVKVGG
10	PPA-I	3orgA	0.143	0.822	1.019	threading_10	------------------------------SLMYLLR---------LVCFLTLLGVTAALFIFAVDLAVHGLEELRMKISRLAGRFAGYILYVVSGVALCLLSTGSGLPQMKSILSFYDKMRSALELRVLFAKALGLICAIGGGPNVHIACIIAHQFYRLGVFKELCTDRALRLQTLAAACAVGLASSFGA------PLGGVLYSIETIASFYL--------VQAFWKGVLSALSGAIVY------ELDVSRTQTLLYAILGALMGVLGALFIRCVRSIYELRMRHYPGTNRYFLVGVVALFASALQYPFPRATINDLFKAVTEL-----ILMPIIKFILVALSIGLPLPAGVFVPSFLIGAGFGRLYGELMRVVFGNAIVPTRALSCAVIIFEVTGQ-------------IRHLVPVLISVLLAVIVGNAFN

Predicted Tertiary Structure


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TM-score=0.855 to 1kpkA SCOP code=f.20.1.1	TM-score=0.606 to 2vglB SCOP code=i.23.1.1	TM-score=0.762 to 1kpkA SCOP code=f.20.1.1	TM-score=0.812 to 1kpkA SCOP code=f.20.1.1	TM-score=0.623 to 1wa5B SCOP code=a.118.1.1