Template-based Modeling Results for DMA_ECOLI

Submitted Primary Sequence

>Length 278
MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHCCCCEEEEECCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHCCCEEECCCHHHHHHHCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEEECCCHHCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK
55323121411101210031024102302000100001000002111220000001210010021022203200310220012222113001103321232321111000000001101201022123121212103233221122101100220230201020012001301321000012121222221311211222122310110030021025330100000220210220033020110202100002232332011000002222223344
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKKNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDASVVYCDPPYAPLSATANFTAYHTNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKVRRSISSNGGTRKKVDELLALYKPGVVSPAKK
1	MUSTER	2g1pB	0.984	0.885	2.986	threading_1	--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPLTNS----------FTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVKV------------KVDELLALYKP--------
2	SPARKS	2g1pa	0.992	0.878	6.231	threading_2	--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPLN-----------SFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVV-------------KKVDELLALYKP--------
3	PROSPECT2	2g1pA	0.992	0.878	4.427	threading_3	--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAP-----------LNSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVV-------------KKVDELLALYKP--------
4	PPA-I	2g1pB	0.980	0.885	3.696	threading_4	--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPLTNS----------FTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVK------------VKVDELLALYKP--------
5	HHPRED-l	2g1p_A	0.996	0.878	8.401	threading_5	--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPL-----------NSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVK-------------KVDELLALYKP--------
6	HHPRED-g	2g1p_A	0.996	0.878	7.229	threading_6	--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPL-----------NSFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVVK-------------KVDELLALYKP--------
7	SP3	2g1pa	0.992	0.878	6.186	threading_7	--KNRAFLKWAGGKYPLLDDIKRHLPKGECLVEPFVGAGSVFLNTDFSRYILADINSDLISLYNIVKMRTDEYVQAARELFVPETNCAEVYYQFREEFNKSQDPFRRAVLFLYLNRYGYNGLCRYNLRGEFNVPFGRYKKPYFPEAELYHFAEKAQNAFFYCESYADSMARADDSSVVYCDPPYAPLN-----------SFTLEQQAHLAEIAEGLVERHIPVLISNHDTMLTREWYQRAKLHVV-------------KKVDELLALYKP--------
8	SAM-T99	2dpmA	0.293	0.885	5.911	threading_8	--TLQPFTKWTGGKRQLLPVIRELIPKYNRYFEPFVGGGALFFDLAPKDAVINDFNAELINCYQQIKDNPQELIEILKVH--QEYNSKEYYLDLRSADRDMMSEVQRAARILYMLRVNFNGLYRVNSKNQFNVPYGRYKNPKIVEELISAISVYINQLEIKVGDFEKAIVDVRTGDFVYFDPPYIPLFTS-----YTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSSSALVEELYKDFNIHYVEGK------------ISEIIVT-----------
9	MUSTER	1yfjA	0.238	0.906	2.709	threading_9	---MLGAIAYTGNKQSLLPELKSHFPKYNRFVDLFCGGLSVSLNVNGP-VLANDIQEPIIEMYKRLINVSWDDVLKVIKQYKLSKTSKEEFLKLREDYNKTRD----PLLLYVLHFHGFSNMIRINDKGNFTTPFGKRTINKNSEKRFNHFKQNCDKIIFSSLHFKDV--KILDGDFVYVDPPYLIT--VADYNKF----WSEDEEKDLLNLLDSLNDRGIKFGLSNVENTLLKEWSKKYNVKHLNKKYVFNIHSKEKNGTDEVYIFN----------
10	SPARKS	2dpma	0.300	0.899	5.894	threading_10	--TLQPFTKWTGGKRQLLPVIRELIPKTNRYFEPFVGGGALFFDLAPKDAVINDFNAELINCYQQIKDNPQELIEILKVHQEY--NSKEYYLDLRSADRDMMSEVQRAARILYMLRVNFNGLYRVNSKNQFNVPYGRYKNPKIVEELISAISVYINNLEIKVGDFEKAIVDVRTGDFVYFDPPYIPL-----FTSYTHEGFSFADQVRLRDAFKRLSDTGAYVMLSNSSSALVEELYKDFNIHYV------------EGKISEIIVTNYEK-------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.846 to 2dpmA TM-score=0.978 to native SCOP code=c.66.1.28	TM-score=0.854 to 2dpmA TM-score=0.982 to native SCOP code=c.66.1.28	TM-score=0.832 to 2dpmA TM-score=0.965 to native SCOP code=c.66.1.28	TM-score=0.842 to 2dpmA TM-score=0.977 to native SCOP code=c.66.1.28	TM-score=0.843 to 2dpmA TM-score=0.976 to native SCOP code=c.66.1.28

Experimental Structure

Download 2g1pB

SCOP code=c.66.1.28