Template-based Modeling Results for CYSH_ECOLI

Submitted Primary Sequence

>Length 244
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
CCHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHCCHHHHHCCCEEEECCCEEEEECCCCCCHHHHHHHHHHCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
4432012212312422311001201220351302000020032022200000010010000010013022302000000112031003002200430412020020232211111312311331231122001001021013004412120001002322221232121011131001000002011300020023210310111221121111110123122221233120212442112243
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
1	MUSTER	2o8vA	0.996	0.939	3.787	threading_1	-SKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKL--------------KRECGLHEG
2	SPARKS	2oq2a	0.305	0.955	5.294	threading_2	MKTYHLNNDIIVT----QEQLDHWNEQLIKLTPQEIIAWSIVTFP-HLFQTTAFGLTGLVTIDMLSKLSEKPELLFIDTLHHFPQTLTLKNEIEKKYNQTIHVYKPDESEADFASKYGDFLWE--KDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDEGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRW----TECGIHEA
3	PROSPECT2	2oq2A	0.272	0.963	3.882	threading_3	MKTYHLNNDIIV----TQEQLDHWNEQLIKETPQEIIAWSIVTF-PHLFQTTAFGLTGLVTIDMLSKLSEKYYLLFIDTLHHFPQTLTLKNEIEKKYNQTIHVYKPDGCESEADFASKYGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEILNGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRW----TECGIHEA
4	PPA-I	2o8vA	0.996	0.939	5.856	threading_4	-SKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKL--------------KRECGLHEG
5	HHPRED-l	2goy_A	0.252	0.877	5.677	threading_5	------------------FDLPALASSLADKSPQDILKAAFEHFGDELWISFSGAEDV-VLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGV--RAWATGQRRDQSPGTSQVAVLEIDKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWE---------
6	HHPRED-g	2goy_A	0.262	0.877	5.382	threading_6	------------------FDLPALASSLADKSPQDILKAAFEHFGDELWISFS-GAEDVVLVDMAWKLNRNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLEPLVKEKGLFSFYRDGHGECCGIRKIEPLKRKLAGVR--AWATGQRRDQSPTRSQVAVLEIDKPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERGYISIGCEPCTRPVLPNQHEREGRWWWE---------
7	SP3	2oq2a	0.310	0.951	5.169	threading_7	MKTYHLNNDIIVT----QEQLDHWNEQLKLETPQEIIAWSIVTFP-HLFQTTAFGLTGLVTIDMLSKLSEKPELLFIDTLHHFPQTLTLKNEIEKKYNQTIHVYKPDESEADFASKYGFLWEKD---DDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDNGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRW----TECGIHEA
8	SAM-T99	2o8vA	0.991	0.939	6.853	threading_8	-SKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKLK--------------RECGLHEG
9	MUSTER	2oq2C	0.318	0.967	3.253	threading_9	MKTYHL----NNDIIVTQEQLDHWNEQLIKLTPQEIIAWSIVTFP-HLFQTTAFGLTGLVTIDMLSKLSEKPELLFIDTLHHFPQTLTLKNEIEKKYYQTIHVYKPDESEADFASKYGFLWEKD---DDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLSIIEIDEGILKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSIGDYHSTQPVKEGEDERAGRWKGAKTECGIHEA
10	SPARKS	1sur_	1.000	0.881	5.230	threading_10	-SKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWDNRTIYQYLQKHGLKYHPLWDEGYLSVGDTH----------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.657 to 1gpmA TM-score=0.977 to native SCOP code=c.23.16.1	TM-score=0.657 to 1gpmA TM-score=0.977 to native SCOP code=c.23.16.1	TM-score=0.642 to 1gpmA TM-score=0.837 to native SCOP code=c.23.16.1	TM-score=0.641 to 1gpmA TM-score=0.818 to native SCOP code=c.23.16.1	TM-score=0.657 to 1gpmA TM-score=0.977 to native SCOP code=c.23.16.1

Experimental Structure

Download 2o8vA

SCOP code=c.23.16.1