Template-based Modeling Results for CYSD_ECOLI

Submitted Primary Sequence

>Length 302
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEECCHHHCCHHCCCCEEEEECCCCCCCCCCCCCCHHHCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCCEEECCCCCCCCCCCCCEEEEEEECCCCCCEECCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
45321121133112201300220032022100000001200000100220023121200000001113031002002200421202100011220122222222311230010010200120023111100000022322332142210102142232223222121130121312413111000002011300020012220310101121322111111100011332132333321221101021121110102132323202200220112222122112113332111221443224
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDQIRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
1	MUSTER	1zunA	0.762	0.626	1.901	threading_1	VD--KLTHLKQLEAESIHIIREVAAEFDNPVL-YSIG-KDSAVLHLARKAFFPGKLPFP-VHVDTRWKFQE-YRFRDQV--EEGLDLITHIN---------------SAKHTDIKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAA------------------------------------------------------------------------------------------
2	SPARKS	1zuna	0.749	0.632	3.980	threading_2	SHVDKLTHLKQLEAESIHIIREVAAEFDNPV-LYSIGKDSAV-LHLARKAFFPGKLPFP-VHVDTRWKFQE-YRFRDQVEEGLDLITHINSAKHT-----------------DIKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAA------------------------------------------------------------------------------------------
3	PROSPECT2	3fwkA	0.167	0.815	3.154	threading_3	SDSIIAQTQRAINTTKSILINETFPKWGEISFSYNGGKDCQVLLLLYLSCLWYYIVKLPTVFIDHDDTFKTLENFIEETSLRYSLSLYESDRDKC--------------ETMAEAFETFLQVFP--ETKAIVIGIRHTDPFGEHLKPIQKTDA----------------------NWPDFYRLQPLLHWNLANIWSFLLYSNEPICELYRYGFTSLGNVEE---TLPNPHLRKDKNSTPLKLNFEWEIENRYKHNEVTKAEPIPIADEDLVKIENLHEDRAGRIKKK---------------
4	PPA-I	1zunA	0.738	0.632	3.063	threading_4	SHVDKLTHLKQLEAESIHIIREVAAEFDNPVL-YSIG-KDSAVLHLARKAFFPGKLPFP-VHVDTRWKFQE---YRFRDQVEEGLDLITHIN---------------SAKHTDIKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAA------------------------------------------------------------------------------------------
5	HHPRED-l	1zun_A	0.819	0.623	7.453	threading_5	H-VDKLTHLKQLEAESIHIIREVAAEFDNPV-LYSIGKDSAV-LHLARKAFFPGKLPFPV-HVDTRWKFQE-YRFRDQ--E--GLDLITHIN--------------SAKHTDI-KTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAA------------------------------------------------------------------------------------------
6	HHPRED-g	1zun_A	0.819	0.623	9.298	threading_6	H-VDKLTHLKQLEAESIHIIREVAAEFDNPV-LYSIGKDSAV-LHLARKAFFPGKLPFPV-HVDTRWKFQE-YRFRDQ--E--GLDLITHIN--------------SAKHTDI-KTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAA------------------------------------------------------------------------------------------
7	SP3	1zuna	0.749	0.632	4.383	threading_7	GSHDKLTHLKQLEAESIHIIREVAAEFDNPV-LYSIGKDSAV-LHLARKAFFPGKLPFP-VHVDTRWKFQE-YRFRDQVEEGLDLITHINSAKHT-----------------DIKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFAA------------------------------------------------------------------------------------------
8	SAM-T99	1zunA	0.789	0.613	6.780	threading_8	-----LTHLKQLEAESIHIIREVAAEFDNPV-LYSIGKDSAV-LHLARKAFFPGKLPFPV-HVDTRWKFQE-YRFRDQVEE--GLDLITHINSAKHT---------------DIKTEGLKQALDKHGFDAAFGGARRDEEKSRAKERVYSFRDSKHRWDPKNQRPELWNVYNGNVNKGESIRVFPLSNWTELDIWQYIYLEGIPIVPLYFA-------------------------------------------------------------------------------------------
9	MUSTER	2goyB	0.249	0.705	1.872	threading_9	FDPALASSLA--DKSPQDILKAAFEHFGDELWISFSGAEDVVLVDMAWKLN----RNVKVFSLDTGRLHPETYRFIDQVREHYGIAIDVLSPDPRLLELFSFYRDGHGECCGIRKIEPLKRKLA--GVRAWATGQRRDQSPTRSQVAVLE-------IDGAFSTPE-----------KPLYKFNPLSSMTSEEVWGYIRMLELPYNSLHERG---------------------------------YISIGCEPCTRPVLPNQ---------------HEREGRWWWE---------------
10	SPARKS	2oq2a	0.195	0.748	3.770	threading_10	LNNVTQEQLDHWNEQPQEIIAWSIVTFPHLFQTTAFGLTGLVTIDMLSKLS-EKYYMPELLFIDTLHHFPQTLTLKNEIEKKYNQTIHVYKPADFASKGDFLWEKDDDKYDYLAKVEPAHRAYKELHISAVFTGRRKSQGSARSQLS-------IIEIDELNGI----------------LKINPLINWTFEQVKQYIDANNVPYNELLDLGYRSI--------GDYHSTQPVKEGED--ERAGRWTECGIH--EASRFAQF----------------------------------------

Predicted Tertiary Structure


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TM-score=0.789 to 1zunA SCOP code=c.26.2.2	TM-score=0.787 to 1zunA SCOP code=c.26.2.2	TM-score=0.775 to 1zunA SCOP code=c.26.2.2	TM-score=0.602 to 1zunA SCOP code=c.26.2.2	TM-score=0.793 to 1zunA SCOP code=c.26.2.2