Template-based Modeling Results for CYDB_ECOLI

Submitted Primary Sequence

>Length 379
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHHHCCCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCHHHHHHCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY
4421320320000000000000000200000000002001333211200010000102010000000000000000200010000000000000000001100011133133221220010000000000000000000100210202133211010002102000010000000000000000000000202131122021001100000000000000001111200001011122021111123002200100110230111101000000100001001323320100000000000000000010011001112113000001102123210100000000000000101000000011201331024233223
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY
1	PROSPECT2	3a6pA1	0.094	0.955	1.721	threading_1	AMDQALCEQLVKAVTVMVPCGLRLAEKTQFGLQILEHVVKFSRLEKELIANGTLNILEEENHIKDALSRIVVEMWPDMLIELDTLSKGETQTELVMFILLRLAEDVVTFQTLPPQRRMERIFSFLLNTLQENVNKYVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLLLNEQELQLGAAECLLIAVSRKGKLEDRKPLMVLFGDVAMHYIFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLE---SFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNL-----VKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLAC---------RLDPKTSFQMAGSTF
2	PPA-I	3zuxA	0.093	0.736	1.008	threading_2	-------------------------------------------------------------NILSKISSFIGKTFSLWAALFAAAAFFPYIPWLLGIIMFGMGLTL---KPSDFDILFKHPKVVIIGVIAQFAIMPATAWCLSLLNLPAEIAVGVILVGCLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGVVVLHNGIGYLLGFFAAKWTGLPYDAQKALTIEVGMSGLAAALAAAHFAA------APV-------VAVPGALFSVWHNISGSLLATYWAAKA-----------------------
3	PROSPECT2	1jdha	0.072	0.987	1.689	threading_3	MRSPQMVSAIVETARCTAGTLHNLSHHREGGIPALVKMLGSPVDSLFYAITTLHNLLKTNVKFLAITTDCLQILNQESKLIILASGGPQALVNIMEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPVGLIRNLALCPANHAPLRRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAE-----AIEAEGATAPLTELLHSRN
4	PROSPECT2	1ee4a	0.074	0.931	1.585	threading_4	QELPQMTQQLMQEQLSATVKFRQILSREHRVVPRLVEFMRENEMLQLEAAWALTNIASGTSAQTKVVVQLLYTGSVEVKEQAIWALGNVATDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCDWSVVSQALPTLAKLIYSM-----------------DTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELSTLVQTPALRAVGNIQTQVVINAGVLPALRLLLSSPK-----ENIKKEACWTISNITAGNTEQIQAVIDALIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKP----LCDLLEIADNRIIEVTLDALENILKMGEADKEARGLNINENADFIEKAQNENF
5	PROSPECT2	1xm9A	0.077	0.826	1.569	threading_5	GLTIPKAVQYEKYQAIGAYYIQHTCFQDEAAAGALRNLVFRSTTNKLETRRQLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIEVFFNATGCLRNLSSA---DAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKS------------------------VENCMCVLHNLSYRLDAEVPTRYRQLEYNPKGSGWLYHSDAIRTYLNLMGKSKK------------------DATLEACAGALQNLTASKGLMSSGMSQLIGLGLPQIARLLQSGNSDVVRSGASLLSNMSVMGNQVFPEVTRLLTSHT--------GNTSNSEDILSSACYTVRNLM-------------ASQPQLAKKELQGVL
6	PROSPECT2	1ejlI	0.062	0.887	1.553	threading_6	GTVNWSVEDIVKGIQATQAARKLLSREKQPLIPKFVSFLGKTDCSPFESAWALTNIASGTSEQTKAVVPAFISLLAHISEQAVWALGNIASAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL------------------------CRNKNPAPPLDAVEQILPTLVRLVLADSCWAISYLTDGPNERIEMVVLPIVTPALRAIGNIQTQKVIDAGALAVFPSLLTNPK-----TNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL---SAKDTKIIQVILDAISNIFQAAE-----------KLGETEKLSRHENEFS
7	MUSTER	1pw4A	0.120	0.926	0.762	threading_7	EIDYRRLRWQIFLGIFFGYAAYYLV----KNFALAMPYLVESRGDLGFALSGIS--I-GNPRVFLPAGLILAAAVMLFMGFVPWATAVMFVLLFLCGWFQGMGWPPCGRT-SQKERGGIVSVWNCAHNVGGGIPPLLFLLGM-------------AWFNDWHAALYMPAFCAILVALFAFAMCGLPPIEEYKNDTAKQIFMQYVKLLWYIAIANVFVYLLRYGILDPTYLKEVKHFALDKSSEYAGIPGTLLCGWMSDKVRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI-GLHALELAPKKAA----GTAAGFTGLFGYLGGSVAASAIVGYFGWLIVVMIGE--KRRHEQLLQELV
8	SPARKS	3q73b	0.100	0.765	0.828	threading_8	SLDASRPWLVFWTVHSLDLL------GVAL-----------DQGTKDRVVSTLLHFLSPK-------GG--FGGGPSQIPHLLPTYASVCSLAIAG-----------NDSSTGGWKDLAAARQSIYEFFMRC--------------KRPDGG----FVVCEGGEVDVRGTYCLLVVATLLPELVDKFVSQTYEGGFACASFPFPEPSGGYTSCSLNSHFLLTSVPLPSFPLGEPIEGGGFRGRTNKLVDGCYSWW--------------VGGGAPVAEELVRREKSRKVIPPIFNRVALQEFTLVA--------AQQDPGSTGGLRDKPGKRPDQYHTCNNLSGLSIAQH------------KMSHSPSTVSSNRLKFD
9	PROSPECT2	1gw5b	0.092	0.979	1.542	threading_9	TNKKGEIFELKAELEAVKKVIAAMTVGKDVLFPDVVNCMQDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCPLIRALAVRTMLCEPLPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLVVLSAVKVLMKFLEMLLKKLAPPLVTLPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPASQANIAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQSAERCVSTLLDLIQVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVNADELLES--------FLEGFHDVKLFLKKPSET
10	PPA-I	3g61A4	0.100	0.792	0.984	threading_10	---------GWLTLVILAISPVLGLSAG--IWAKILSSFTDKELHAYAKAGAVA-----EEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITA----------------NISMGAAFLLIYASYALAFWYGTSLVISKEYSLDEDVPPASFWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGP-PETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGS-----RLAVIFQNIANLGTGIIISLIYFE---------------------NVLLVFSAIVFGAMAVGQVS--------------------SFAPDY

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.885 to 1kpkA SCOP code=f.20.1.1	TM-score=0.623 to 1u6gC SCOP code=a.118.1.2	TM-score=0.387 to 1pv6A SCOP code=f.38.1.2	TM-score=0.417 to 1c17M SCOP code=f.18.1.1	TM-score=0.671 to 1ialA SCOP code=a.118.1.1