Template-based Modeling Results for CYDA_ECOLI

Submitted Primary Sequence

>Length 522
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCEEEECCHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHEEEEECCCCCCCEEEEECCCCCCCCEEEEEECCCCHHHHHCCCCCCEEECHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
541211000010000000000000000000000000000001222310210020001000000000000000010111110010030001000000001000000010000000000032003100000000000000000000000101120010010002111010000020001110101000000000000000000000010032322200220000000000000000000012001110221322002010002123220100000001344321201020120000001211222020032012212330230120010021132232232022102102311210100330123112101110221233222301000000000000000000000000000123312323100100000000010010000000211221000010010112112121020000000000000000001010002003200221322312132222222335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
1	PROSPECT2	1jdha	0.089	0.881	2.058	threading_1	LLNDEDQVVVNKAAVMVHQLSRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLREGLLAIFKSGGIPALVKMGSPVDSVLFYAITTLHNLLLHEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQAYGNQESKLIILASGGPQA-----------------LVNIMRTYTYEKLLWTTSRVLKVNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDQEGMEGLLGTLVQLLGSDDINVCAAGILSNLTCNN----------------------YKNKMMVCQVGG------IEALVRTVLRAGDREDITEPAICALRHTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALC----PANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILAVHNRIVIRGLN-------TIPLFVQLLYSPIENIQRVAAGVLCELAQDKEAAEAIPLTELLHSRNEGVA------TYAAAVLFRMS
2	PPA-I	3dh4A	0.101	0.854	1.389	threading_2	AEQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIKTILAVFWISLYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFALVYSIVVWTDVIQVFFLVLGGFMTTY----MAVSFIGGTD---GWFAGVSKMVDAAPGHFEMILDQSNPQYMN---LPGIAVLIGGLWVANLYYWGFNQYIIQRTLAA----------KSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQ-LMASLGDIAATNLPSAAN--------------------ADKAYPWLTQFLPVGVKGVVFASLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVIIACLIAPMLGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWSKGAIIGVVASIPFALFLKF---MPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTSSMFVTDRSFNIAAYGIMIVLAVLYTLFWVLYK--------------------------------
3	PROSPECT2	1qsaa	0.083	0.964	2.030	threading_3	DSLDEQRSRYAQIKQAWYRQITDDLMPPARTLQSRFVNELARRED--WRGLLAFSAQCNYYYAKWNAWQGAKELWLTGKSQPNACDKLFSVWRAPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNPNTVLTFARTTGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLWRYWQADLLLERGREAEAKEILHQMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQ---------GPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWDHLEERFPLAYTSGKEIPQSYAMAIARQESAWLMQIMPGTATHTVKMFSIPGYSSPGQLLDPETNINIGTSYLQYVYQQFGNNRIFSSAAYWLGNSAGRIDAVAFVESIPFSETRGYVKNVLAYDAYYRYFMGDKPTLMSATEWGRRY--------
4	PPA-I	3g61A1	0.097	0.649	1.038	threading_4	-----------------------------------VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGW--------FDVHDVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAA--YEVFKI---------------IDNKPSIDSFSGWQLTL-LLLAIVP----------IIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAH------VFGITFSFTQAMMYFSYAACFRFGAY-LVTQQLMT---------------------------------------------------------------------------------------------------------
5	PROSPECT2	1b3ua	0.081	0.944	1.982	threading_5	DDSLYPIAVLQLRLNSIKKLSTIALALGVERTRSELLPFLTDTIYEVLLALAEQLGTFTTLVGGPEYVHCLLPPLEATVEETVVRDKAVESLRAIS--HEHSPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCSAVKAELRQYFRNLCSDDT------PMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLARLLAVEACVNIAQLLPQEDLEALVMPTLRVRYMVADKFTELQKAVGPEITKTDLVPAFQN--------------LMKDCEAEVRAAASHK----VKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALA---SVIMGLSPILGKDNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITTSLQKIGPILDNSTLQSEVKPILEKLTQDQDV
6	PPA-I	1b3uA	0.095	0.904	1.005	threading_6	VEETVVRDKAVESLRAISHEH--SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPT-------------------LRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPA--FQNLMKAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILGKDNTIEHLLPLFLAQLKDECPE-VRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEY---MPLLAGQLVEFFDEKLNSLCMAWLVDHVYAIAATSNLKKLVEKFGKEWAHATIIPKVLAM---SGDPNYLHRMTTLFCINVLSEVCGQDITTKGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEKLTQVDVKYFAQEALTVLSLA--------------------
7	PROSPECT2	3a6pA1	0.102	0.791	1.980	threading_7	AMDNALCEQLVKAVTVMCVPCGLRLAFGLQILEHVVKFRWNGMSRLEKVYLKNSVMELIAIKDALSRIVVEMIKREWPQHWPDMLIELDTLSKQGETQTELVMFILLR--LAEDVVTFQTLPPQRRTLTQNMERIFSFLLNTLQENVNKYQQVKTDT-------------------SQESKAQANCRVGVAALNTLAGYIDWVSMSHITAENCKLLEILCLL-----------------------LNEQELQLGAAE---------------------------------CLLIAVSRKGK-------LEDRKPLMVLFGDVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCAL-------GNQLCALLGADSDVETPSNFGKYLESFLAFTSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGVMRLACRLDPKTSFQMAGEWLKY------------------QLSTF
8	PROSPECT2	1qgra	0.077	0.994	1.957	threading_8	MIDANARREVQCVAGIACAEIPVNKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEAAALQNLVKIMMGPALFAITIEAMKSDIDEVALQGIFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTDDWNPCKAAGVCLMLLATCCYRDAAVMAFGCILEGPEPSQLKPLVIQAMPTLITAAWTVGRICELLPEAAINDVYLAPLLQCLIEGLSAEPRVASNAADVADDQEEPATYCLSSSFELITTDRPDGHQNNLRSCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFNDLQSLLCATLQNVLRKVQLQISDVVMASLLRMFSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVGDLCRALQSNIIPFCDE---VMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQASQAQVDKSDGDQENVHNQA
9	MUSTER	3dh4A	0.109	0.841	0.854	threading_9	LIQFIGMSGSGYSIGLAIASYEWMSAITLIIVGKYFLPIFIEKGIY----IPEFVEKRF--NKKLKTILAVF--WIS---LYIFVNLTSVLYLGGLALETILGIPLMYSILGLALFAL-SIVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDG-AGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFNQYIIQRAKSVSEAQKGIVFAAFLKLIVPFLVVLP-GIAAYVITSDPQLMASLGDIAATNLPSAANADKA-YPWLTQF-------LPGVKGVVFAALAAAIVSSLASMLNS-----TATIFTMDIYKEYISPDSGDHKLVNVGRTAA-VVALIIACLIAPMLGGIG---------------QAFQYIQEYTGLVSPGILAVFLLGLF----------KKTSKGAIIGVVASIPFALFLKFM------PLSMP---------------------FMDQMLYTLLFTMVVIAFTSLSTSINDDDPKG---ISVTSSMFVTDR
10	SPARKS	2xwub	0.119	0.985	0.881	threading_10	LDQVEHWQSFLALVNMIMFCTGIPSSLTLTFWYTLQDDILSFEAEAVYQQVRPVYFQLVDVLLHPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMAELLSNLYDKLGRLLTSYSWQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLDHPVMINSVLPLVLHALGNPELSVSSVSTLKKICRECVAVSQDVLKTSQCMWLMQALGFLLSVEEILKNLHSLISPYIQQLEKLAEEIPNPSNSNLFTTLDISHPNPVVVVLFQLIQKVLSKWLNDAQVVEFEKSVKTLLDDFAPVPQLCEMLGRMYSTIPQASALDLTRQLVHIFAHFPPIEALFLLVTSVTLTLFQQGPRDH-PDIVDSFMQLLAQALKRKPDLFVKAVFQCAVLALKFPEAKASCGFFTELLPRCGEVESVGKVVQEDGRM--LLIAVLEAIGGQASRSMDCFADILFALNKHCFSLLSMWIKEALQ-----PPGFPSARLSPEQLRERVNKRR

Predicted Tertiary Structure


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TM-score=0.512 to 2q6hA SCOP code=f.54.1.1	TM-score=0.671 to 1wa5B SCOP code=a.118.1.1	TM-score=0.523 to 2q6hA SCOP code=f.54.1.1	TM-score=0.915 to 2ooeA SCOP code=a.118.8.7	TM-score=0.802 to 1slyA SCOP code=a.118.5.1