Template-based Modeling Results for CODB_ECOLI

Submitted Primary Sequence

>Length 419
MSQDNNFSQGPVPQSARKGVLALTFVMLGLTFFSASMWTGGTLGTGLSYHDFFLAVLIGNLLLGIYTSFLGYIGAKTGLTTHLLARFSFGVKGSWLPSLLLGGTQVGWFGVGVAMFAIPVGKATGLDINLLIAVSGLLMTVTVFFGISALTVLSVIAVPAIACLGGYSVWLAVNGMGGLDALKAVVPAQPLDFNVALALVVGSFISAGTLTADFVRFGRNAKLAVLVAMVAFFLGNSLMFIFGAAGAAALGMADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGMSSKTLSVINGIIGTVCALWLYNNFVGWLTFLSAAIPPVGGVIIADYLMNRRRYEHFATTRMMSVNWVAILAVALGIAAGHWLPGIVPVNAVLGGALSYLILNPILNRKTTAAMTHVEANSVE
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSQDNNFSQGPVPQSARKGVLALTFVMLGLTFFSASMWTGGTLGTGLSYHDFFLAVLIGNLLLGIYTSFLGYIGAKTGLTTHLLARFSFGVKGSWLPSLLLGGTQVGWFGVGVAMFAIPVGKATGLDINLLIAVSGLLMTVTVFFGISALTVLSVIAVPAIACLGGYSVWLAVNGMGGLDALKAVVPAQPLDFNVALALVVGSFISAGTLTADFVRFGRNAKLAVLVAMVAFFLGNSLMFIFGAAGAAALGMADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGMSSKTLSVINGIIGTVCALWLYNNFVGWLTFLSAAIPPVGGVIIADYLMNRRRYEHFATTRMMSVNWVAILAVALGIAAGHWLPGIVPVNAVLGGALSYLILNPILNRKTTAAMTHVEANSVE
CCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCHHHHHCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSQDNNFSQGPVPQSARKGVLALTFVMLGLTFFSASMWTGGTLGTGLSYHDFFLAVLIGNLLLGIYTSFLGYIGAKTGLTTHLLARFSFGVKGSWLPSLLLGGTQVGWFGVGVAMFAIPVGKATGLDINLLIAVSGLLMTVTVFFGISALTVLSVIAVPAIACLGGYSVWLAVNGMGGLDALKAVVPAQPLDFNVALALVVGSFISAGTLTADFVRFGRNAKLAVLVAMVAFFLGNSLMFIFGAAGAAALGMADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGMSSKTLSVINGIIGTVCALWLYNNFVGWLTFLSAAIPPVGGVIIADYLMNRRRYEHFATTRMMSVNWVAILAVALGIAAGHWLPGIVPVNAVLGGALSYLILNPILNRKTTAAMTHVEANSVE
55433322322013223300000000000000000000000001100101100000000000000000000100032111110001001112000000001000000000000000010002002021100000000000000000000010010000000000000000100220101211211212320211000000000000001100200110332320000000000001000000000000002221001001110100000000000001100110000000001112122321000000000000000021010001000000000000000000012332331212313200000000000000001002100000000000000000010032322222232324335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSQDNNFSQGPVPQSARKGVLALTFVMLGLTFFSASMWTGGTLGTGLSYHDFFLAVLIGNLLLGIYTSFLGYIGAKTGLTTHLLARFSFGVKGSWLPSLLLGGTQVGWFGVGVAMFAIPVGKATGLDINLLIAVSGLLMTVTVFFGISALTVLSVIAVPAIACLGGYSVWLAVNGMGGLDALKAVVPAQPLDFNVALALVVGSFISAGTLTADFVRFGRNAKLAVLVAMVAFFLGNSLMFIFGAAGAAALGMADISDVMIAQGLLLPAIVVLGLNIWTTNDNALYASGLGFANITGMSSKTLSVINGIIGTVCALWLYNNFVGWLTFLSAAIPPVGGVIIADYLMNRRRYEHFATTRMMSVNWVAILAVALGIAAGHWLPGIVPVNAVLGGALSYLILNPILNRKTTAAMTHVEANSVE
1	MUSTER	2jlnA	0.219	0.990	3.295	threading_1	ARSLLNPSNAPTRYAERSGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVLGEVMSMGGENPMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASTAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPFTFKTGVIVSAVVGLLMMPWFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYWRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAK---TFPLFSEAES-E
2	SPARKS	2jlna	0.215	0.998	9.731	threading_2	ARSLLNPSNAPTRYAERSGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVLGEVMSMGGENPMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNAATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEIPMAILFQVFVLLATWSTNPANLLSPAYTLCSTFPFTFKTGVIVSAVVGLLMMPWFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAK-TFPLFSEAESRNED
3	PROSPECT2	2jlnA	0.203	1.000	3.775	threading_3	EARSLNPSNAPTRYAERSGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITFTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSLGEVMSMGGENMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASREGQTKADARYAIFGFIGAASMVLVGEWNPVIAITEVMAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPFTFKTGVIVSAVVGLLMMPWQAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDTYWRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAKTFPLFSEAESRRPIG
4	PPA-I	2jlnA	0.203	1.000	7.536	threading_4	ARSLLNPSNAPTRYAERSGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVGEVMSMGGENPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNASTAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPFTFKTGVIVSAVVGLLMMPWFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYWRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAKTFPLFSEAESRNEDY
5	HHPRED-l	2jln_A	0.213	0.986	12.298	threading_5	----LNPSNAPTRYAERSGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSGEVMSMGGEPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVGIMAILFVFVLLATWSTNPANLLSPAYTLCSTFPRTFKTGVIVSAVVGLLMMPWQAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAK-TFPLFSEAESRNE-
6	HHPRED-g	2jln_A	0.204	0.995	11.019	threading_6	ARSLLNPSNAPTRYAERSVPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLLLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVSGEVMSMGGEPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEGGMAILFVFVLLATWSTNPAANLLSPAYTLCSTFPRTFKTGVIVSAVVGLLMMPWQFGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAK--TFPLFSEAENDYL
7	SP3	2jlna	0.210	1.000	8.820	threading_7	ARSLLNPSNAPTRYAERSGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVLGEVMSMGGENPMPFSTAIMIFVGGWIAVVVSIHDIVKECKVDPNAATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEIPMAILFQVFVLLATWSTNPANLLSPAYTLCSTFPFTFKTGVIVSAVVGLLMMPWFAGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISLHDLYRTGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAKTLFSEAESRNEDYLR
8	SAM-T99	2jlnA	0.214	0.957	7.912	threading_8	---LLNPSNAPTRYAERVGPFSLAAIWFAMAIQVAIFIAAGQMTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAARMPFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRTNLPLWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLDGADVLGEVMSMGGNPGMPFSTAIMIFVGGWIAVVVSIHDIVKECKADARYATAQWLGMVPASIIFGFIGAASMVLVGEWNPVIAITEVVGGILFQVFVLLATWSTNPANLLSPAYTLCSTFPRTFKTGVIVSAVVGLLMMPWQFGVLNTFLNLLASALGPLAGIMISDYFLVRRRRISGIYTYWRGVNWVALAVYAVALAVSFLTPDLMFVTGLIAALLLHIPAMRWVAK---------------
9	MUSTER	3gi9C	0.131	0.947	1.472	threading_9	MELK-----------NKKSLWEAVSMAVGVMIGASIFSIFGVGAAG---RNLPETFILSGIYALLVAYSYTKLGAKIVSNPIAFIHKAIGDNTGALSILLWMSYVISIALFAKGFAGYFLPLIAPINIAITEIGIVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHPSYVIPDLAPSAVSGMIFASAIFFMGFGVITNASEH----IENPKKNVRAIFISILIVMFVYVGVAISAIGNLASENALAVAAKPFGFLLISIGALFSISSAMNATIYGGANVAYSLAKKVWFKGLYITSALGVLFALLF--NMEGVASITSAVFMVIYLFVILSHYILIDEVGGRKEIVIFS--FIVVLGVFLLLLYYQWITNRFVFYGIIATFIGVLIFEIIYRKVTKRTFSNMYVKSLE
10	SPARKS	2x79a	0.184	0.988	6.788	threading_10	IEEARNPSNAPTRYAERSGPFSLAAIWFAA-IQVAIFIAAG-QTSSFQVWQVIVAIAAGCTIAVILLFFTQSAAIRWGINFTVAAR-PFGIRGSLIPITLKALLSLFWFGFQTWLGALALDEITRLNLPLWIVIFGAIQVVTTFYGITFIRWNVFASPVLLAGVYVYLLDGADVSLGEVSGGENPGPFSTAIGWIAVVVSIHDIVKECKVDPNASREGQTKADARYATAQWLGVPASIIFGFIGAASVLVGEWNPVIAITEVPAILFQVFVLLATWSTNPAANLLSPAYTLCSTFPRVFTFKTGVIVSAVVGLLPQFAGVLNTFLNLLASALGPLAG-IISDYFLVRRRRISLHDLYRTGVNWVALAVYAVALAVSFLTPDLF-VTGLIAALLLHIPARWVAKTFPLFSEAESRNEDLR

Predicted Tertiary Structure


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TM-score=0.649 to 2q6hA SCOP code=f.54.1.1	TM-score=0.633 to 2q6hA SCOP code=f.54.1.1	TM-score=0.652 to 2q6hA SCOP code=f.54.1.1	TM-score=0.639 to 2q6hA SCOP code=f.54.1.1	TM-score=0.648 to 2q6hA SCOP code=f.54.1.1