Template-based Modeling Results for PTMCB_ECOLI

Submitted Primary Sequence

>Length 462
MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWLPNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSMIMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANTFVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMVASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIAGGMSGTWMFNLLDGGLVAGPSPGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLILKMEKTVETESEDEFAQSANAVKAMKQEGAFSLSRVKRIAFVCDAGMGSSAMGATTFRKRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLDTLFNQLTAEHKH
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWLPNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSMIMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANTFVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMVASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIAGGMSGTWMFNLLDGGLVAGPSPGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLILKMEKTVETESEDEFAQSANAVKAMKQEGAFSLSRVKRIAFVCDAGMGSSAMGATTFRKRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLDTLFNQLTAEHKH
CCCCCHHHHHHHHCCHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCHHCCCCCCHHHHHHHHHHCCEEEEEECCCCCCCHHHHHHHHHHCCCCHHHCCHHHHHHHHHCCCCEEEEHHHHCCHHHHHHHHHHHHHHHHHHHHHCCEEECCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEHHHCCCCCEEEEECHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHHHCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWLPNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSMIMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANTFVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMVASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIAGGMSGTWMFNLLDGGLVAGPSPGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLILKMEKTVETESEDEFAQSANAVKAMKQEGAFSLSRVKRIAFVCDAGMGSSAMGATTFRKRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLDTLFNQLTAEHKH
554421311122011101211011000000000000111322112131013001000100000000010010011321000000000000000200100000000100000021012003420310111002000200000000000110001002001200320010003110000000001001000010101200001000210132220000001111110000000001002221330010000000000001000000012010000000000000000100200000110100000000102322110000000001000000001013233223232332013102113324332222233122000001111011000011013103502120202000032022201000001202220451232100001100223202200320233355
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MENKSARAKVQAFGGFLTAMVIPNIGAFIAWGFITALFIPTGWLPNEHFAKIVGPMITYLLPVMIGSTGGHLVGGKRGAVMGGIGTIGVIVGAEIPMFLGSMIMGPLGGLVIKYVDKALEKRIPAGFEMVINNFSLGIAGMLLCLLGFEVIGPAVLIANTFVKECIEALVHAGYLPLLSVINEPAKVLFLNNAIDQGVYYPLGMQQASVNGKSIFFMVASNPGPGLGLLLAFTLFGKGMSKRSAPGAMIIHFLGGIHELYFPYVLMKPLTIIAMIAGGMSGTWMFNLLDGGLVAGPSPGSIFAYLALTPKGSFLATIAGVTVGTLVSFAITSLILKMEKTVETESEDEFAQSANAVKAMKQEGAFSLSRVKRIAFVCDAGMGSSAMGATTFRKRLEKAGLAIEVKHYAIENVPADADIVVTHASLEGRVKRVTDKPLILINNYIGDPKLDTLFNQLTAEHKH
1	PROSPECT2	1jdha	0.099	0.937	1.756	threading_1	LNDEDQVVVNKAAVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLIPALVKMLG----SPVDSVLFYAITTLHNLLLHQEGAKMAVRLAG-----GLQKMVALLNKTNVKFLAITTDILAYGNQESKLIILASGGPQALVNIMRKLLWTTSRVLKVSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQFV--------EGVRMEEIVEGCTGALHILARDV------HNRIVIRGLNTI----PLFVQLLYSPIENIGVLCELAQDKEAAEAIEALTELLHS
2	SPARKS	1vkra	0.432	0.206	2.847	threading_2	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLQISVTNSAINNLPPDVDLVITHRDLTERAMRVPQAQHISLTNFLDSGLYTSLTERLVAAQRH
3	PPA-I	1vkrA	0.421	0.206	4.254	threading_3	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLQISVTNSAINNLPPDVDLVITHRDLTERAMRQPQAQHISLTNFLDSGLYTSLTERLVAAQRH
4	PROSPECT2	1b3ua	0.098	0.974	1.723	threading_4	LRNEDVQLRLNSI-KKLSTIALALGVERTRSELLPFLTDTIYDEDEVLLALAEPEYVHCLLPPLESLATVELAGGDWFTSRTSACGLFSVCYPRVSSAVKAELRQYFRNLVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSFLAQLK-------DECPEVRLNIISN----LDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAREAATSNLKKLVEKFGKEWAHATIKVLAMSGDPNTLFCINVLSEVCGQDITTKHMTVLRMAGDPLQSEVKPILEKLTQD
5	HHPRED-l	1vkr_A	0.415	0.203	4.618	threading_5	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLQISVTNSAINNLPPDVDLVITHRDLTERAMQVPQAQHISLTNFLDSGLYTSLTERLVAAQR-
6	PROSPECT2	3a6pA1	0.094	0.877	1.687	threading_6	-AMDQVNALCEQLVKAVTVMMDPNSTQRYRCVPCGLRLAEKTQVAIQILEHVVKFLKNSVMELIANGTLN--ILEEENHIKDALSRIVVEMPQHWPDMLIELDQTELVMFILLRLAEDVVTFQTLPPQRRLTQNMERIFSFLLNTLQENVNKSKAQANCRVGVAALNTLAGIDWVSMSHITAENCKLLILCLLLNEQELQLGAAECLLI-------AVSRKGKLEDRKPLMVLFG-------DVAMHYILSAAQTADGGGLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLESFL-----AFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNLVKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQ------------------------GEVMRLAC-----------RLDPKTSFQMAGEWLKYQSTF
7	HHPRED-g	1vkr_A	0.421	0.206	3.689	threading_7	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLQISVTNSAINNLPPDVDLVITHRDLTERAMQVPQAQHISLTNFLDSGLYTSLTERLVAAQRH
8	PROSPECT2	1ee4a	0.095	0.870	1.671	threading_8	LNSDDMQEQTVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIQTKVVVDAD-------------AVPLFIQLLYTGSVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS-----YLSDGPQEAIQAVIDVR---------------IPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTL------DALENILKMGEADKEARGLNINENADFIEKAG-----------GMEKIFNCQQN---------ENDKIYEKAYKIIETY-F
9	SAM-T99	1vkrA	0.421	0.206	4.324	threading_9	-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SHVRKIIVACDAGMGSSAMGAGVLRKKIQDAGLQISVTNSAINNLPPDVDLVITHRDLTERAMRQPQAQHISLTNFLDSGLYTSLTERLVAAQRH
10	MUSTER	1wa5B	0.133	0.846	0.728	threading_10	LNSDDQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQT--KVVVDA--DAVPLFIQLLYTGSVEV-KEQAIWALGNVAGDSTDYRDYVLQ---CNAMEPILGLFKPSLIRTATWTLSNLCRGPDWSVVSQALPTLAKLIYSMD----TETLVDACWAIS--YLSDG---PQEAIQAVIDVRKRLVELLSHST---LVQTPALRAVGN-IVTGNDLQTQVVINAGVL---ALRLLLSSPCWTISNITAG-NTEQIQAVIDANLI-----PPLVKLLEVAE----------YKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRLDALENILKMGEADKEARGLNINENADFIEKAGG-ME----KIFNCQQNEN-----DKIYEKAYKI-------IETYFGEEE--------------

Predicted Tertiary Structure


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TM-score=0.643 to 1kpkA SCOP code=f.20.1.1	TM-score=0.656 to 1wa5B SCOP code=a.118.1.1	TM-score=0.588 to 1vkrA SCOP code=c.44.2.1	TM-score=0.588 to 1vkrA SCOP code=c.44.2.1	TM-score=0.787 to 1b3uA SCOP code=a.118.1.2