Template-based Modeling Results for CITT_ECOLI

Submitted Primary Sequence

>Length 487
MSLAKDNIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSLAKDNIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN
CCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHCCCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSLAKDNIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN
5522232013000000000000001014102220010000000000000021021000000000000001112223133112222323320022001100010000000000000002001001000000031013311000000000000001011011010000000001100221422233322230000000000000000000000000000000200141021301111001000000000000000000101323234233022100211422121232100000000000000001122021000000000000002012132213230101000000000000200230000200000012113211200000000000000011001110000000000000031021121200000000000000000120000000000012030210010000000000000000001002113
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSLAKDNIWKLLAPLVVMGVMFLIPVPDGMPPQAWHYFAVFVAMIVGMILEPIPATAISFIAVTICVIGSNYLLFDAKELADPAFNAQKQALKWGLAGFSSTTVWLVFGAFIFALGYEVSGLGRRIALFLVKFMGKRTLTLGYAIVIIDILLAPFTPSNTARTGGTVFPVIKNLPPLFKSFPNDPSARRIGGYLMWMMVISTSLSSSMFVTGAAPNVLGLEFVSKIAGIQISWLQWFLCFLPVGVILLIIAPWLSYVLYKPEITHSEEVATWAGDELKTMGALTRREWTLIGLVLLSLGLWVFGSEVINATAVGLLAVSLMLALHVVPWKDITRYNSAWNTLVNLATLVVMANGLTRSGFIDWFAGTMSTHLEGFSPNATVIVLVLVFYFAHYLFASLSAHTATMLPVILAVGKGIPGVPMEQLCILLVLSIGIMGCLTPYATGPGVIIYGCGYVKSKDYWRLGAIFGVIYISMLLLVGWPILAMWN
1	MUSTER	3dh4A	0.134	0.903	1.027	threading_1	LP-----WWAVGASLIAANAEQFI----GMSGSGYSI---LAIASYEWMS----AITLIIVGKYFLPIFIEKGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLTSVLYLGGLALETIGIPLMYSILGLALF-VWTDVIQVFFLVLGGFMTTYMAVSFIGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIGGLWVANLYYWGFN--QYIIQRTLVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSD-AATNLPSAANADKAYPWLTQFLPV-----GVKGVVFAALAAAIVS-----SLASMLNSTATIFTMDI--YKEYISPDSGTAAVVALIIACLIAPMLGGIGAFQYIQEYTGLV-----SPGILAVFLLGLFW----TTSKGAIIGVVASIPFALFLKFMSMPFMDQMLYTLLFTMVVIAFTSLSTSPKGI------VTSSMFVTDSFNIAAYGIMIVLAVLYTLFWVYK
2	PROSPECT2	1jdha	0.102	0.910	2.199	threading_2	AVVNLIRAIPELTKLLAVMVHQLS----KKEASRHAIMPQMVSAIVRTMQNTNDVETARCTAGTLHNL------SHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLKMVALLNKTNVKFLAITTDCLQILAY--GNQESKLIILASGGPQALVNIMRTYTY----------EKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQGIEALVRTVLRAGDREDITEPAICALRHLTSRHQE-------------------AEMAQNAVRLHYGLPVV---VKLLHPPSHWPLIKATVGLIRNLANHAPLREQGAIPRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAAVLFRMS
3	PROSPECT2	1b3ua	0.089	0.926	2.072	threading_3	AALGVERTRSELLPFLTALAEQLGTFTTLVGGPEYVHCLLKAVESLRAISHEHSPSDLEAHFVPLVKRLAGGDWFTSRTSPRVSSAVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRFTELQKAVGPEITKTDLVPAFQNLMAAASHKVKEFCENLSADCRENVIILPCIKELVSDASVIMGLSPILGKDNTIEHLLPLFLAQLKDECEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV-------------DHVYAIREAATSNLKKLVEKFGKEWAHATIIPKVLAMSGDPNYLHRMTTLFCINVLSEVC--GQDITTKHMLPTVLRMAG----DPVANVRFNVAKSLQKIGPILD-----------------NSTLQSEVKPILEKLTDVKYFAQEALTVLS
4	PROSPECT2	1qgra	0.097	1.000	2.062	threading_4	MEAAVENLPTFLVELSKNYVLHTLGTETYRPSSAEHMKESTLEAIGYICQDIDPEQLQDKSNEILTAIIQGMRKEEPSNNNFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMLFAITIEAMKSDIDEVALQGIEFWSNVCDESKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCEDDIVLEGPEPSQLKCELLPEAAINDVYLAPLLQCLIEGNVCWAFSSLAEAAYEAADVADDQEEELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVKNSAKDCYPAVQKTTLVIMERLQQVLQMESHIQSTSDRIQFLQSLLCATLQNVLRKVQALQISDVVMASLLRMFSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNYAEYQVCLAAVGLVVMQLLLENLGNENVHRSVASQAQVDKSDYDMVDYLNELRESCLEAYTGIVLSFIDHIA
5	PROSPECT2	1w63A	0.089	0.951	2.035	threading_5	MPRTQAEEREMIQKECAAIRSSFREEDNTYRCRNVAKLLYMHMFGQLECLKLIASQKFTDKRIGYLGAMLLLDERQDVHLLNHSTQFVQGLALCTLGCMGSSEMCRDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELMEMFHTSVVLLTEMCERSPDMLAHFLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSSEAMNDILAQVATNTETSKNVGNAILYETVLTIMGLRVLAINILGRFLLNNDKNIRYVALTSLLKT-------VQTDHNAVQRHRSTIVDCLKDLDVSIKRRAMELSFAL-----------VNGNNIRGMMKELLYFLDSCEPEFKADCASGIFLAAEKYAPSKRWHIDTIMRVLVPNLIQLITNSVEMHAYTVQRLYKAILGDYSQQPLVQVAAWCIGEYGDLLVSGQCEEE------EPIQVTEDEVLDILESVLSVTRGYALTAIMKLSTRFT
6	PROSPECT2	2bkuB	0.088	1.000	2.024	threading_6	MSTAELQFAGLSSQVLILAALTLKNELVSKDSVKTNAAAQLIAAIADIELAEQPENVKRASLLALGYMCESADALVSSSNSTETSKAVRLAALNALADSLIFAFGCLCKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILMDGPDKVQRIADSVAESIDPQQHLPGVVQACLIGLNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTMVEYATDTVAETSASISTFVMLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISVLAQMISNPNARRELKPAKPENGTLEALDYQIKVLEAVLDAYVGIVAGTIFQFIA
7	MUSTER	1ialA	0.109	0.850	0.929	threading_7	QGTVNWSVEDIVKGIN--------------NLESQLQATQAARKLLS---EKQPPIDNIIRAGLIPKFVSFLGKTDCSPI--------QFESAWALTNIAS-------GTSEQTKAVVDGG----AIPAFISLLASPHAHISEQAVWALGNIAG---GSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR---------NKNPAPPLDAVEQILPT---LVRLLHHNDPEVLADSCWAISYLTD-------GPNERIEMVVKVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSK--ADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL---LSAKDTKIIQVILDAISNIFQAAEKLGETLSIMIEECGGLDKIEALQ-----ESVYKASLNLIEKYF-----
8	SPARKS	2xwub	0.107	0.940	0.966	threading_8	LPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVPLQDC---EALIQAAFAALQDSELFDSSVPLVLGLQEQLRQAVQN-GDMETSHGICRIAVALGENHSRSFLALVNMIMFCTGIPSLTLTFWYTLQDDILSF-EAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEKEQFRIYRVDISDTLMYVYEMLGAELLSNLYDKLGRLLTSYS-------------WQHTEALLYGFQSIAETIDVNYSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVM------INSVLPLVLHALGNPELSVS---SVSTLKKICRE--CKYDLPPYNIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYIQQLEKLAEEIPKLAIVHILGLLSNLFTTLDISHPNPVVVVLQQVFQLIQKVLSKAQVVEAVCAIFEKSVKTLLDDFAP
9	PROSPECT2	1ejlI	0.098	0.838	1.987	threading_9	GTVNWEDIVKGILQATQAARKLLSREKQPPIDNIIRAGLI--PKFVSFLGKTDCSPIQFESAWALTNI----------------ASGTSEQTKAVVDGG-------AIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVR--------LLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLL----------GATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGR----------------------QDQIQQVVNHGLVPFLVGVLS-----KADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKL---------SIMIEECGGLDKIEALQVYKASLNLIEKYFS
10	PPA-I	1xm9A	0.070	0.817	0.933	threading_10	--------------------------------------GLTIPKAVQYLSSQD-EKYQAIGAYYIQHTCFQDESAKQQVYQLGGLRSPNQNVQQAAAG---ALRNLVFRSTTNKLETRRQN---GIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDK-----------SVENCMCVLHNLSYRLDAEVPTRYRQLEYNALPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKG----------------LMSSGMSQLIGLKEKGLPQIARLLQ-----SGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMA--SQPQLAKQYFS----------SSMLNNIINLCRPKAAEAARLLLSD

Predicted Tertiary Structure


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TM-score=0.552 to 2q6hA SCOP code=f.54.1.1	TM-score=0.564 to 2q6hA SCOP code=f.54.1.1	TM-score=0.653 to 1xm9A SCOP code=a.118.1.24	TM-score=0.872 to 1b3uA SCOP code=a.118.1.2	TM-score=0.719 to 1b3uA SCOP code=a.118.1.2