Template-based Modeling Results for CHO_ECOLI

Submitted Primary Sequence

>Length 295
MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGYKILCKPLLSGNYEITELDPANDQRAS
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGYKILCKPLLSGNYEITELDPANDQRAS
CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCEEEEEEEHHHHHHHHHHHHCCCCHHHHHHHHHEEEEEEECCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCEEEEEEEECCCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCCEEECCCCCCCCCC
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGYKILCKPLLSGNYEITELDPANDQRAS
5544222342323122223123102300440132100000104332000000102201200132033231210032012010000211100001002002322121223134333000000034523100012122342110000001230012002000200300201221322242210021104312000114323320221021012203321231111101221132111021021011001011022011113232211110020002002212110020232333535
1234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345678901234567890123456789012345
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MVRRLTSPRLEFEAAAIYEYPEHLRSFLNDLPTRPGVYLFHGESDTMPLYIGKSVNIRSRVLSHLRTPDEAAMLRQSRRISWICTAGEIGALLLEARLIKEQQPLFNKRLRRNRQLCALQLNEKRVDVVYAKEVDFSRAPNLFGLFANRRAALQALQTIADEQKLCYGLLGLEPLSRGRACFRSALKRCAGACCGKESHEEHALRLRQSLERLRVVCWPWQGAVALKEQHPEMTQYHIIQNWLWLGAVNSLEEATTLIRTPAGFDHDGYKILCKPLLSGNYEITELDPANDQRAS
1	MUSTER	1yd6D	0.301	0.315	1.122	threading_1	--------------------NERLKEKLAVLPEQPGCYLMKDKHGT-VIYVGKAKSLKERVRSYFTDGKTQRLVEEIADFEYIVTSSNAEALILEMNLIKKHDPKYNVMLKDDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2	PROSPECT2	2qc0A	0.080	0.851	1.302	threading_2	QAYNHLPPLPLDSKLAELAETLPILKACI-----------------------PARAALAELKQAGELLPNQGLLINLLPLLEAQGTKEALRYRTALYQCFTQLSNCSTIKSVQDVRK----VPGTS------LTNQATGEVIYTPPAGESVIRDLLSNWEAFLHNQDDVDPLQLLSAPILYLSRYIVA---------HKQDYYRLLLNVTT--QQEWQPWIIFILNAVEQTAKWTTHKIAAARELIAHTTEYVRQQNLVESGLAKRQTASVYLKQLCDIGVLEEVTKDSNQFSRY
3	PROSPECT2	1hr6a	0.070	0.966	1.290	threading_3	ARTNTPGHFSEGRNLKEHVEGRAMAETLELLGGN--YQCTSSRENLMYQASVFNQDVKLSAEYEIDWMKPELVLPEPENTVAAFVGVPHEKAL---ELTGKYLGDWQSTHPPITKKV-----AQYTGGESCIPPAPVFGNLGFEGLPIDHPDIYALATLQTLLGGGGSFSAGGPGKGMYSRLYTHVLNQYYFVYSDSIPQAAPQAVEVIAQQMYNTFANKDLRLTEDEVSRAKNQLKSSLLMNKLVELEDMGRQVLMHGRKIPVNEMISKIVAEMIFTGNVNNAGNGKGRANSSS
4	SPARKS	1ycza	0.322	0.295	1.088	threading_4	-------------------MKEKIRKKILLAPEEPGVYIFKN--KGVPIYIGKAKRLSNRLRSYLQTEKVFRIGEEADELETIVVMNEREAFILEANLIKKYRPKYNV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5	PROSPECT2	1yd6A	0.315	0.312	1.427	threading_5	M-------------------NERLKEKLAVLPEQPGCYLMKDKHGTV-IYVGKAKSLKERVRSYFTGTKTQRLVEEIADFEYIVTSSNAEALILEMNLIKKHDPKYNVMLKD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6	PPA-I	1yd6D	0.301	0.315	2.585	threading_6	--------------------NERLKEKLAVLPEQPGCYLMKDKHGT-VIYVGKAKSLKERVRSYFTGTKTQRLVEEIADFEYIVTSSNAEALILEMNLIKKHDPKYNVMLKDDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7	HHPRED-l	1yd6_A	0.293	0.312	6.307	threading_7	-------------------MNERLKEKLAVLPEQPGCYLMKDK-HGTVIYVGKAKSLKERVRSYFTGGKTQRLVEEIADFEYIVTSSNAEALILEMNLIKKHDPKYNVMLKD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8	HHPRED-g	1yd6_A	0.304	0.312	5.672	threading_8	-------------------MNERLKEKLAVLPEQPGCYLMKDKHGTV-IYVGKAKSLKERVRSYFTDGKTQRLVEEIADFEYIVTSSNAEALILEMNLIKKHDPKYNVMLKD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9	SP3	1ycza	0.322	0.295	0.434	threading_9	-------------------MKEKIRKKILLAPEEPGVYIFKNK--GVPIYIGKAKRLSNRLRSYLQTEKVFRIGEEADELETIVVMNEREAFILEANLIKKYRPKYNV-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10	SAM-T99	1yd6D	0.293	0.312	5.516	threading_10	---------------------ERLKEKLAVLPEQPGCYLMKDK-HGTVIYVGKAKSLKERVRSYFTDGKTQRLVEEIADFEYIVTSSNAEALILEMNLIKKHDPKYNVMLKDDK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.419 to 1mk0A SCOP code=d.226.1.1	TM-score=0.456 to 2r2vA SCOP code=h.1.3.1	TM-score=0.422 to 1mk0A SCOP code=d.226.1.1	TM-score=0.505 to 1hr6A SCOP code=d.185.1.1	TM-score=0.400 to 1mk0A SCOP code=d.226.1.1