Template-based Modeling Results for CDSA_ECOLI

Submitted Primary Sequence

>Length 285
MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTL
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTL
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTL
431111100000000000000000000000000000000010002001132312200000000000000000011013111210010000000000000000001111110112102001000000000000000000001213322220000000000000000000000020013241012003222120000000000000000001111310110000000000000100200110012302032112001010000000000000000000001100322
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MLKYRLISAFVLIPVVIAALFLLPPVGFAIVTLVVCMLAAWEWGQLSGFTTRSQRVWLAVLCGLLLALMLFLLPEYHRNIHQPLVEISLWASLGWWIVALLLVLFYPGSAAIWRNSKTLRLIFGVLTIVPFFWGMLALRAWHYDENHYSGAIWLLYVMILVWGADSGAYMFGKLFGKHKLAPKVSPGKTWQGFIGGLATAAVISWGYGMWANLDVAPVTLLICSIVAALASVLGDLTESMFKREAGIKDSGHLIPGHGGILDRIDSLTAAVPVFACLLLLVFRTL
1	PROSPECT2	3a6pA1	0.102	1.000	1.550	threading_1	ALCEQLVKAVTVMCVPCGLRLAEKTQVAIVRHFGLQILSVMELIANGTLNILEEENHIKDALSRIVVEMIKMLIELDTLSKQGETQTELVMFILLRLAEDVVTFQTLPPQRRRDIQQTLTQNMESFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTCKLLEILCLLLNEQELQLGVSRKGKLEDRKPLMVLDVAMHYILSAAQTADLVEKHYVFLKRLCQVLCALGNQLCALLGADSDVETPSNFLSRDPLLLAIIPKYLRASMQQGEVMRLACRLD
2	HHPRED-g	3b9w_A	0.133	0.926	1.021	threading_2	VFVRRYGFSATTGTGLPLYILLRALSVDAVIYAEFAVATGLIAMGAV-LGRLRVFQYALLA---LFIVPVYLLNEWLVLFQDSAGSIAIHAFGAYFGLGVSIALTTARAPIESDATSDRFSMLGSMVLWLFWPSFATA--IV---PFEQMPQTIVNTLLALCGATLATYFLSALF-HKG---KASIVDMANAALAGGVAIGSVC-------NI-VGPVGAFVIGLLGGAISVVGFVIQPMLESKAKTIDTCGVHNLHGGLLGGFSAILIVPGLTGIGITLALALI
3	PROSPECT2	3kb9A	0.078	0.902	1.520	threading_3	AVVEEYADGLCYTDLMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLTLVAGFADSVRRLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHWIWTDLLEPSSGCELPKHPAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHN----------------------LGISLITHHSLTLEEAIGEVRRRVEECITEFLAVERDALRF------ADELADGTVRGKELSGAVRANVGNMRNWFSSVYWFN
4	PROSPECT2	1ee4a	0.090	0.979	1.496	threading_4	QELPQMTQQLLEAAWALTNIASGTSAQTKVVVLFIQLLAIWALGNVAGDSTDYRDYVLPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLVQTPALRAVGNIVTGNLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVAEDKTKKEACWAISNASSGGIIRYLVSQGCIKPLCDLLEIIEVTLDALENILKMGEADKEARG------LNINENADFIEKAGGMEKIFEKAYKIIETYF
5	PROSPECT2	1r2fA	0.103	0.818	1.479	threading_5	IVWNRLTSDIPAWQTLSAAEQQLTIRVFTGLTLLDTIQNIAGAPSLMADAITPHEEAVLSNISFMEAVHARSYSSIFSTLCQTKEVDAAYAWSEENPPLQRKAQIILAHYVSDEPLKKKIASVFLESFLFYSGFWLPMYFSSRGKL-------TNTADLIRLIIRDEAVHG-----------------------------YYIGYKYQIALQKLSAIEREELKLFALDLLMELYDNEIRYTEAL----------YAETGWVNDVKAFL------CYNANKALMNL
6	PROSPECT2	2bkuB2	0.076	0.972	1.477	threading_6	TTSASISTFVMKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVADMLMGLFFRLLIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADISNSLYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMQNTKPE---NGTLEALDYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVDATSRAAVGAMFPDGSIKQFYGQ-----DWVIDYIKRTQATKDTARWAREQL
7	MUSTER	3a0oA	0.099	0.958	0.929	threading_7	MYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVAAWDTKGATSRAYNDEAGFRVVVALAWGYDWLYDHLSEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALQDEAGEWLDYTVEFYSPWAGTDGGWAPHYWMTGMAYLIEAANLIRSYIG-YDLYQR--PF--FQNTGRFPLYTKAPGTRRANFDSTLGDLPGLKLGYNVRQFAGVTGNGHYQWYFDHIKADATGTEMA-------FYNYGWWDLNFDDLVYRHDYPQV
8	SPARKS	2xwub	0.107	0.986	0.874	threading_8	NTLLKLIPLVLLQEQLRQAVQNGDMETSHGICRIAVALGENHSRALLDQVEHWALVNMIMFCSSLTLTFWYTLQDDILSFEAEKQAVYQQVYRPVYFQLVDVLLHKAQFPSDEEYGFWSSDEKEQFRIYRVDISDTLMYVYEMLGAEL--LSNLYDKLGRLLTSYSWQHTEALLYGFQSIAETIDVNYSVPGLIGLIPRVQLADTVMFTIGALDHPVMINSVLPLVLHALPELSVSSVSTLKKIC--RECKYDLPPYANIVAVSQDVLHKTSQCMWLMQALGFLL
9	PROSPECT2	3a0oA3	0.086	0.898	1.455	threading_9	GFADAVHCGWAEFYEKSVEPWLERRQMYIDCQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVA---------AWDTKGATSRAYNDEAGFRVVVALAWGYDWLYDHLS-----EDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALWLDYTVEFLATLYSPWAGTDGGWAPHYWMTGMAYLIEAANLIRSYIGYDLYQLKLGYNVRQFAGVTGNYFDHIKADATGTEMAFYNYGWWD---------------LNFDDLVYRHDY
10	PPA-I	3zuxA	0.097	0.832	0.905	threading_10	GVIAQFAIMPATAWCLSKLLNLPAEIAVGVILVGCCPGGTASNVMTYLARGNVALSVAVTSVSTLTSPLLTPAIFLMLAGEMLEIQAAGMLMSIVKMVLLPIVLGLIVHKVLGSKTEKLTDALPLVSVAAIVLIIGAVVGASKGKIMESGLLIFAVVVLHNGIGYLLGFFAAKWTGL-------PYDAQKALTIEVGMQNSGLAAALAAAH-FAAAPVVAVPGALFSVWHNISGSLLATYWAAKA----------------------------------------

Predicted Tertiary Structure


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TM-score=0.498 to 1j30A SCOP code=a.25.1.1	TM-score=0.570 to 1oyzA SCOP code=a.118.1.16	TM-score=0.712 to 2nuuD SCOP code=f.44.1.1	TM-score=0.430 to 1j30A SCOP code=a.25.1.1	TM-score=0.740 to 1hm7B SCOP code=a.128.1.4