Template-based Modeling Results for SYN_ECOLI

Submitted Primary Sequence

>Length 466
MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF
CCEEEHHHHHCCCCCCCCEEEEEEEEEEHHCCCCCEEEEEEECCCCEEEEEEEECCCCHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCHHHHHHCCCEEECCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCEEECCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCHHCCCCCEEEEECHHHHHHHHHHHCCCEEEECCCEECCCCCCCCCHHHHHHHHEEHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCEEECCHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCEEEHHHHHHHHHHCCCHHHEEECCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF
4321201211313222312000100010122232100000011010111000013322330121023022110010102022233434212020110100021333221312244222210131110101121100002001100200030025220010000000012132112002001222331333332423133301232000000010000000010220010010010232321210010010100000020220010022002100210032013003101330233001202311324122030220020024023313221321220223112100222131000002013303101132343120000000001100100110122232310131035221233101100101310001110000000000000010310010000121243033
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MSVVPVADVLQGRVAVDSEVTVRGWVRTRRDSKAGISFLAVYDGSCFDPVQAVINNSLPNYNEDVLRLTTGCSVIVTGKVVASPGQGQQFEIQASKVEVAGWVEDPDTYPMAAKRHSIEYLREVAHLRPRTNLIGAVARVRHTLAQALHRFFNEQGFFWVSTPLITASDTEGAGEMFRVSTLDLENLPRNDQGKVDFDKDFFGKESFLTVSGQLNGETYACALSKIYTFGPTFRAENSNTSRHLAEFWMLEPEVAFANLNDIAGLAEAMLKYVFKAVLEERADDMKFFAERVDKDAVSRLERFIEADFAQVDYTDAVTILENCGRKFENPVYWGVDLSSEHERYLAEEHFKAPVVVKNYPKDIKAFYMRLNEDGKTVAAMDVLAPGIGEIIGGSQREERLDVLDERMLEMGLNKEDYWWYRDLRRYGTVPHSGFGLGFERLIAYVTGVQNVRDVIPFPRTPRNASF
1	MUSTER	2xgtA	0.295	0.910	3.624	threading_1	---VKIRDL---VKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQ-TYDALTVNTECTVEIYGAIKEVPN---GHELIADFWKIIGNAPP--GGIDNVLNASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD--------------------YFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLAD--EEAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEHNNEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP
2	SPARKS	2xgta	0.292	0.910	7.329	threading_2	---VKIRDLVK---HRNERVCIKGWIHRMRRQGKSLMFFILRDGTG--FLQVLLMDKLCQT-YDALTVNTECTVEIYGAIKEVPN---GHELIADFWKIIGNAPP--GGIDNVLNASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD--------------------YFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLAD--EEAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEHNVEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP
3	PROSPECT2	2xgtA	0.297	0.910	5.872	threading_3	VK---IRDL---VKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGF--LQVLLMDKLCQT-YDALTVNTECTVEIYGAIKEVP---NGHELIADFWKIIG--NAPPGGIDNVLNASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNL--------------------DYFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLAD--EEAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEHNNEFGNTFTYGEDIAEAAERFMTDT-INKPILLNRFPSEIKAFYMQRAQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP
4	PPA-I	2xgtA	0.288	0.910	5.727	threading_4	------VKIRDLVKHRNERVCIKGWIHRMRRQGKSLMFFILRDGTGFLQVLLMDKLCQ---TYDALTVNTECTVEIYGAIKEVP---NGHELIADFWKIIGNAPP--GGIDNVLNASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD--------------------YFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLAD--EEAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEHNNEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP
5	HHPRED-l	1wyd_A	0.295	0.910	4.035	threading_5	MYRSFIADVT--PEYDGKEVIWAGWVHLLRD-LGGKKFIILRDKTGL--GQVVVDKNSS-AFGISQELTQESVIQVRGIVKADKRAPRGIELHAEEITLLSKAKAPLPLDVSKVKADIDTRLRERVLDLRRQEMQAVIKIQSLALKAFRETLYKEGFIEIFTPKIIASATEGGAQLFPVI--------------------YFGKEAFLAQSPQLYKELMAGVVERVFEVAPAWRAEESDTPFHLAEFISMDVEMAFADYNDVMQLLEKILHNIVKTIKEEGKEELKILNYEPP---------EVKIPIKRLKYTEAIEILRSKGYNIK----FGDDIGTPELRILNEELKEDLYFIVDWPSDARPFYTSKSE-PELSESFDLIYKFL-EIVSGSTRNHKREVLEEALKKKGLKPESFEFFLKWFDYGMPPHAGFGMGLARLMVMLTGIQSVKEIVPFPRDKKRLT-
6	HHPRED-g	3nem_A	0.307	0.910	3.639	threading_6	YRTHYSSEITE--ELNGQKVKVAGWVWEVKDLG-GIKFLWIRDRDGI--VQITAPKKKELFKL-IPKLRSEDVVAVEGVVNFTPKAKLGFEILPEKIVVLNRA--ETPLPLDPTGAELDTRLDNRFMDLRRPEVMAIFKIRSSVFKAVRDFFHENGFIEIHTPKIIATATEGGTELFPM--------------------KYFEEDAFLAQSPQLYKQIMMSGLDRVYEIAPIFRAEEHNTTRHLNEAWSIDSEMAFIDEEEVMSFLERLVAHAINYVREHNAKELDILNFELE---E---P---KLPFPRVSYDKALEILGDLG----KEIPWGEDIDTEGERLLGKYMMEPLYFLYQYPSEAKPFYIMKYDNKPICRAFDLEYRGV-EISSGGQREHRHDILVEQIKEKGLNPESFEFYLKAFRYGMPPHGGFGLGAERLIKQMLDLPNIREVILFPRDRRRLTP
7	SP3	2xgta	0.295	0.910	7.860	threading_7	---VKIRDLVK---HRNERVCIKGWIHRMRRQGKSLMFFILRDGTG--FLQVLLMDKLCQT-YDALTVNTECTVEIYGAIKEVP---NGHELIADFWKIIGNA--PPGGIDNVLNASVDKMLDNRHLVIRGENAAALLRLRAAATRAMREHFYNAGYVEVAPPTLVQTQVEGGSTLFNLD--------------------YFGEQSFLTQSSQLYLETCIPTLGDVFCIAQSYRAEKSRTRRHLAEYAHVEAECPFITLDDLMEKIEELVCDTVDRLLAD--EEAKKLLEHINPKF-----QPPERPFLRMEYKDAIKWLQEHNNEFGNTFTYGEDIAEAAERFMTDTI-NKPILLNRFPSEIKAFYMQRDQDNTLTESVDLLMPGVGEIVGGSMRIWKFDELSKAFKNVEIDPKPYYWYLDQRLYGTCPHGGYGLGLERFICWLTNTNHIRDVCLYPRFVGRCVP
8	SAM-T99	1x54A	0.374	0.923	5.200	threading_8	-MIEKVYCQEVKPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGIVQAVVAKNVVGEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVS---EFPIPENQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKL--------------------KYFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDDLTT------LKNTEPPFPRISYDEAIDILQSKGVN----VEWGDDLGADEERVLTEE-FDRPFFVYGYPKHIKAFYMKEDPDPRKVLASDMLAPGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLYP
9	MUSTER	1x54A	0.387	0.921	3.458	threading_9	IEKVYCQEV--KPELDGKKVRLAGWVYTNMRVG-KKIFLWIRDSTGI--VQAVVAKNVEETFEKAKKLGRESSVIVEGIVKADERAPGGAEVHVEKLEVIQAVSEF-PIPENPEQASPELLLDYRHLHIRTPKASAIMKVKETLIMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLK--------------------YFDKYAYLSQSAQLYLEAAIFGLEKVWSLTPSFRAEKSRTRRHLTEFWHLELEAAWMDLWDIMKVEEELVSYMVQRTLELRKKEIEMFRDD-----LTTLKNT-EPPFPRISYDEAIDILQSKG----VNVEWGDDLGADEERVLTEE-FDRPFFVYGYPKHIKAFYMKEDPDPRKVLASDMLAPGYGEIIGGSQREDDYDKLLNRILEEGMDPKDYEWYLDLRRYGSVPHSGFGLGVERLVAWVLKLDHIRWAALFPRTPARLYP
10	SPARKS	3m4pa	0.282	0.912	6.255	threading_10	--TPIVCNIRDAAGLEGKLVTFKGWAYHIRKARKTLIFVELRDGSGYCQCVIFGKELCE--PEKVKLLTRECSLEITGRLNAYAGKNHNLEMQVTEWKVIGES-PIDLENIINKDSSIPQKMQNRHIVIRSEHTQQVLQLRSEIQWYFRKYYHDNHFTEIQPPTIVKSTL--------------------------FKLQYFNEPAYLTQSSQLYLESVIASLGKSFCMLSSYRAEQSRTVRHLAEYLHLEAELPFISFEDLLNHLEDLVCTVIDNVMAVHGDKIRKMNPHLK---------LPTRPFKRMTYADAIKYCNDHGILKDKPFEYGEDISEKPERQMTDEI-GCPIFMIHFPSKMKAFYMKVPGHPDLTESVDLLMPGVGEIVGGSMRIWNYDELMGAYKANGLNPDPYYWYTQQRKYGSCPHGGYGLGVERLVMWLLGEDHIRKVCLYPRYLERCEP

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.854 to 1b8aA SCOP code=b.40.4.1	TM-score=0.862 to 1b8aA SCOP code=b.40.4.1	TM-score=0.845 to 1b8aA SCOP code=b.40.4.1	TM-score=0.836 to 1b8aA SCOP code=b.40.4.1	TM-score=0.847 to 1b8aA SCOP code=b.40.4.1