Template-based Modeling Results for ARNT_ECOLI

Submitted Primary Sequence

>Length 550
MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLASGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFTLRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKGKSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLTVLPWGLAIAQREPNFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLPGALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLAAKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLWAFFGWYTLTNVEKTWPFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSRYILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHRQEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLASGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFTLRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKGKSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLTVLPWGLAIAQREPNFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLPGALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLAAKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLWAFFGWYTLTNVEKTWPFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSRYILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHRQEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK
CCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCHHHHCCCCCHHHHHHHHHHHCCCCEEEECCHHHHHHHHHHHCCCCEEEECCCCHHCCCCCCCHHCCCCCCHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCCEEEECCCEEEEEECCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLASGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFTLRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKGKSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLTVLPWGLAIAQREPNFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLPGALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLAAKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLWAFFGWYTLTNVEKTWPFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSRYILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHRQEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK
5422210000000000000010122111311111002002100220100000111232133000000000000100111100010000000000000001001211322100000000000000000000100000000000000000001012232230300000000000000000100000000000000000022112201210010000000100010000022213001100012201100123232521111000000000000000000001101321220000000000000000000130211000000000000000100110133232101010000000000000000001221313121132211010000000000000000001112230100000000000000100012312423102200320132033220000110000000011022320000232010310030131302101032022002213432210000002433313222013221102242000001345
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MKSVRYLIGLFAFIACYYLLPISTRLLWQPDETRYAEISREMLASGDWIVPHLLGLRYFEKPIAGYWINSIGQWLFGANNFGVRAGVIFATLLTAALVTWFTLRLWRDKRLALLATVIYLSLFIVYAIGTYAVLDPFIAFWLVAGMCSFWLAMQAQTWKGKSAGFLLLGITCGMGVMTKGFLALAVPVLSVLPWVATQKRWKDLFIYGWLAVISCVLTVLPWGLAIAQREPNFWHYFFWVEHIQRFALDDAQHRAPFWYYVPVIIAGSLPWLGLLPGALYTGWKNRKHSATVYLLSWTIMPLLFFSVAKGKLPTYILSCFASLAMLMAHYALLAAKNNPLALRINGWINIAFGVTGIIATFVVSPWGPMNTPVWQTFESYKVFCAWSIFSLWAFFGWYTLTNVEKTWPFAALCPLGLALLVGFSIPDRVMEGKHPQFFVEMTQESLQPSRYILTDSVGVAAGLAWSLQRDDIIMYRQTGELKYGLNYPDAKGRFVSGDEFANWLNQHRQEGIITLVLSVDRDEDINSLAIPPADAIDRQERLVLIQYRPK
1	MUSTER	3rceA	0.141	0.944	1.100	threading_1	NNSIKYTCILILIAFAFSVLC-DQLMITTNDGYAFAEGARDMIAGFH----QPNDLSYFGS--SLSTLTYWLYSILPFSESIILYMSTFFASLIVVPIILIAREY-KLTTYGFIAALLGSIANSYYNRSGYYDTDMLVLVLPMLILLTFIRLTINKD----IFTLLLSPIFIMIYLWWSYSLNFAMIGLFGLYTLVFHR--KEKIFYLAIALMIIALSMLAWQYKLALIVLLFAIFAFKEEKINFISISILHLSGGFMYFPEVFMQRISSSVLVFILSFIGFILLKDHKSMLLALPMLALGFMALRA-GLRFTIYAVPVMALGFGYFLYAFFNFLEKKQIKLNKNILLILIAFFSISPALMHIYYYKS--STVFTSYE-YGYPIRYYS-GKDNFFSSFVLSKEQ-IPAANMARLSVEYTEKSFDVLKAMVKQTSAKDFLESLNDK-NKTRIYMPYRM--LRIMPVVAQ--NP----DNGEQEKSLFFSQANDGSVMLDN-GVEIINDFREGASIPLKAFVDIESITNGKFYYNE-IDSKAQIYLLFLREY
2	SPARKS	3rcea	0.128	0.949	1.504	threading_2	NNSIKYTCILILIAFAFSVLCRDQLMITTNDGYAFAEGARDMIAG----FHQPNDLSYFGS--SLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNMSGYYDTDMLVLVLPMLILLTFIRLTINKDIFTLLLSPIFIMIYLW---WYPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALSMLAWQYKLALIVEEKINFYMIWALIFISISILHLSGGAFPEVFMQRISSSVLVFILSFIGFILLCKDHKS-------MLLALPMLALGFMALRFTIYAVPVMALGFGYFLYAFFNFLEKKQIKLSLRNKNILLILIAFFSISPALMHIYYYKSSTVFTSYEASILNDLYVVAWWDYGYPIRYYLGKDNFFSSFVLQIPAANMARLSVEEKSFKENYPDVLKAMVKDYNQTS----------AKDFLESLNDKNIYMPYDNGEQEKSLFFSQAQDGSVMLDN-GVEIINDFREGASIPLKAFVDIESITNGKFYYNE-IDSKAQIYLLFLREY
3	PROSPECT2	1b3ua	0.091	0.882	2.342	threading_3	LRNEDVQLRLNSIKKLSTIALALGVETIYDEDEVLLALAEQL----------GTFTTLVGGPEYVHCLLPPLESLATVEETVVRDKAVESSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDNVKSEIIPMFSNLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITKTDLVPAFQNLMAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSALASVIMGLSPILGKDNTIEHLLPLFLAQLRLNIISNLDCVNEVIGIRQLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLVDHVYAIREAATSNLKKLVIIPKVLAMSGDPNYLHRMTTLFCINVLSEVCGQDITT-----KHMLPTVLRMAGD------PVANVRFNVAKSLQK-----------------IGPILDNSTLQSEVKPILEKLTQ----------DQDVDVKYFVLSLA-----------------
4	PPA-I	3dh4A	0.116	0.802	0.953	threading_4	IASYEWMSAITLIIVGKYFLPIGIYTIPEFVEKRFNKKLKTILAVFWISLYIFVNLT-----SVLYLGGLALETILGIP-----LMYSILGLALFALVYSIVVWTDVIQVFFLVLGGFMTTYMAVSFIGGTDGWFAGVSKMVDAAPGHFEMILDQSNPQYMNLPGIAVLIG--------GLWVANLYYWYIIQRTLAAKSVSEAQKGIVFAAFLKLIVPFLVVLPGIAAYVITSDPQLMASLGDIAATNLPSAANADKAYPWLTQFLPVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDIYKEYISPDSGDHKLVNVGRTAAVVALIIACLIAGGIGQAFQYIQEYTGLVSPGILAVFLLGLFWKKTT----------SKGAIIGVVASIPFALFLKFMPLSMPFMDQMLYTLLFTMVVIAFTSLSTSINDDDPKGISVTSSMFVTDRSGIMIVLAVLYTLFWVLYK---------------------------------------------------------------------------------
5	HHPRED-l	3rce_A	0.115	0.900	4.107	threading_5	NNSIKYTCILILIAFACRLYVAWDQMITTNDGYAFAEGARDMIAG--FHQP---ND-LSYFGSSLSTLTYWLYSILPFSFSIILYMSTFFASLIVVPIILIAREYK-LTTYGFIAALLGSIANSYYNRTMSGYTDMLVLVLPMLILLTFIRLTINKDI----FTLLLSPIFIMIYLWWSSYSLNFAMIGLFGLYTLVFHRKEK-IFYLAIALMIIALSMLAWQYKIFKEEKYMIWALL---------------NTIDP---EVFMQISSSVLVFILSFIGFILLCKDHKSMLLALPMLALGFMAL--RAG--LRFTIYAVPVMALGFGYFLYAFFEKKQIKLSNKNILLILIAFFSISPALMHIYYY-KSSTVFTSYE-ASILNDLKVVAWWDYIRYYSDVKDGGKHLGKDNFFSSFVLSVEYVLKAMVKNQTSAKDFLESLNDKTNKTRIYMPYRLRIMPVVNTNPDNGEFFSQAQ-GSVMLDNGVIINDFRA---------LKV-EGA-SIKAFVDIITNGKFYY------NEIDSKAQIYLLFLRE-
6	HHPRED-g	3rce_A	0.116	0.880	3.819	threading_6	NNSIKYTCILLIAFAFSVLCRLY-WVAWTNDGYAFAEGARDMIAG--FHQP--ND--LSYFGSSLSTLTYWLYSILPFSFSIILYMSTFFASLIVVPIILIAREYK-LTTYGFIAALLGSIANSYYNRTMSGYTDMLVLVLPMLILLTFIRLTINKD----IFTLLLSPIFIMIYLWWSSYSLNFAMIGLFGLYTLVFHRKEK-IFYLAIALMIIALSMLAWQYKLAAFKE----------------------NTIDP---EVFMQISSSVLVFILSFIGLCKDHK---SMLLALPMLALGFMA--LRAG--LRFTIYAVPVMALGFGYFLYAFFNKKQIKLSLKNILLILIAFFSISPLMHIYYY--KSSTVFTSY-EASILNDLKVVAWWDYIRYYSDVKTGGKHLGKDNFFSSFVLSVEYVLKAMVKNQTSAKDFLESLNDKTNKTRIYMPYRLRIMPVVNTNPDN-------GEQE-KSLFFSQANA-GSVMLNGIRA-LKV-EGA-SIKAFVDIETNGKFY-----Y-NEIDSKAQIYLLFLREY
7	SP3	3rcea	0.125	0.978	1.372	threading_7	NNSIKYTCILILIAFAFSVLCRDQLMITTNDGYAFAEGARDMIA--GFHQP--NDLSYFG--SSLSTLTYWLYSILPFSFESIILYMSTFFASLIVVPIILIAREYKLTTYGFIAALLGSIANSYYNMSGYYDTDMLVLVLPMLILLTFIRLTINKDIF----TLLLSPIFIMIYLWPSSYSLNFAMIGLFGLYTLVFHRKEKIFYLAIALMIIALQYKLALIVLLFAIFEEKINFYMIWALIFISISILHLSGGAFMIDPEVFMQRISSVLVFILSFIGFILLCKDHKSMLLALPMLALGFMAL-RAGLRFTIYAVPVMALGFGYFLYAFFNFLEKKQILRNKNILLILIAFFSISPALMHIYYYKSSTVFTSYEASILNDLKNKAVVAWWGYPIRYYLIDGGKFFSSFVLSQIPAANMARLSVTEKSFKENYPDVLKAMVKDYNQTSAKDFLESLNDKNFMPYRMLRPVVAQFADNGEQEKSLFFSQAQDGSVMLDNGVEIINDFRAEGASIPLKAFVDIESITNGKFYYNE-IDSKAQIYLLFLREY
8	SAM-T99	1ve6A1	0.130	0.182	0.482	threading_8	-----------------------------------------------------------------------------------------------------------SRIV-----------------------------------------------RD----------------------------------------------------------------------------------VERLIAVEKYSLQGVVD---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GDKLLVVSEGSVN-AYLYDGG-ETVKLN--------------------REPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRPGEEQRLEAVKP---
9	MUSTER	3a0oA	0.125	0.944	1.086	threading_9	HCGWAEFYEKSVEPWLER--PVMPEPQPYPNNTRVATLWRQMYID-------------CQEVIYAIRHLAIAGRVLGRDDLLDASRKWLLAVAAW----GATSRAYNDEAGFRVVVALAWGYDWLYEDERRTVRSVLLERTREVADHVIAHARIHVFPYDSHAVRSLSAVLTPACIALQGESDEAGEWLDYTVEFLAT-LYSPWAGPHYWMTGMAYLIEAANLIRSYIQRPFFQNTGRFPLYTKAFGDDSTLGDLPGLGYNVRQFAGVTGHYQWYFDHIKADATGTEMAFYNYGWWDLNFDDLVYRHDYPQVEAVSPADLPALAVFIGWATIQKDMEDPDRHLQFVFKSSPYGSLSQNAFVLYAHAIQSGYYVAFNSQMHLNWRRQTR----AVLGKGQYAEKDKALARRAAGRIGHVRIVGDATAAYQVANPLVQKVLRETH--VNDSYFVIVDEVECSQELQWLCGRSSFRYNGRKAGFYGQFVYSSGGTPQISAVEGFPDIDPKEFEGLVTLLVPYSLKEPKRIFSF-----IDDQGFSTDIYFSDV
10	SPARKS	1x9na	0.108	0.771	0.811	threading_10	IEEVSARLRVETLSNLLRSVV-------ALSPPDLLPVLYLSL---NHLGPPQQGLELGVG---DGVLLKAVAQATGRQLESVRAEAAEKGDVG-----LVAELPPPPLTASGVFSKFRDIARLTGSASTAKKIDIIKGLFVACEARFIARSLSGRLRLGLAEQSVLAALSQAVSLTPPGQAGKGKTAEARKTWLEEQGILKQTFCE--------------------VPDLDRIIPVLLEHGLERLPEHCKLSPGIPLKPLAH-----------PTRGISEVLKRFEEAAFTCEYKYDGQRAQIHALEGGEVKIFNTGKYPDIIS----RIPKIKLPSVTSFILDTEA------------VAWDREKKQIQP----------------------FQVLTTRKRKEVDASEIQVQVCLYALNGESL------VREP---LSRRRQLLREN------------------------FVETEGEFVF-ATSLDTKD----IEQIAEFLEQSVKDSCEGLVKTLDVD-ATYEIAKRSHNWLKLDGVLVVIGAYLG

Predicted Tertiary Structure


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TM-score=0.399 to 2nr4A SCOP code=b.45.1.4	TM-score=0.732 to 1kpkA SCOP code=f.20.1.1	TM-score=0.419 to 2nr4A SCOP code=b.45.1.4	TM-score=0.795 to 1b3uA SCOP code=a.118.1.2	TM-score=0.493 to 2q6hA SCOP code=f.54.1.1