Template-based Modeling Results for APPY_ECOLI

Submitted Primary Sequence

>Length 249
MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTID
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

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Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTID
CCEEEEEEEECCCEEEEECCEEEEECCCCEEEECCCCHHEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTID
441100000003201000242101024210000132121100001231200102131011001201210123122332011123322121011002103222220110112001000100222210221132323200210010023103330203100320100210023103322220220021010200230032222202100230113111100100131131002200320232232244335
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MDYVCSVVFICQSFDLIINRRVISFKKNSLFIVSDKIRRELPVCPSKLRIVDIDKKTCLSFFIDVNNELPGKFTLDKNGYIAEEEPPLSLVFSLFEGIKIADSHSLWLKERLCISLLAMFKKRESVNSFILTNINTFTCKITGIISFNIERQWHLKDIAELIYTSESLIKKRLRDEGTSFTEILRDTRMRYAKKLITSNSYSINVVAQKCGYNSTSYFICAFKDYYGVTPSHYFEKIIGVTDGINKTID
1	MUSTER	3gbgA	0.192	0.940	2.309	threading_1	NNLYIKMFWISGIAKLIDKNVSYEINSSSIILLKKNSIQRFSLTSLSDENINV---SVITISDSFIRSLKSYILGNKDLLLWNCEHDIAVLSEVVNGFREIN-YSDEFLKVFFSGFFSKVEKKY--NSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
2	SPARKS	3gbga	0.191	0.944	3.968	threading_2	YINDYKMFWIDSGIAKLIDLVSYEINSSSIILLKKNSIQRFSLTSLSDENINV---SVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKK--YNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
3	PROSPECT2	3gbgA	0.187	0.944	3.042	threading_3	KSFQTNVYRMSKFDTYIFCLVSYEINSSSIILLKKNSIQRFSLTSLSDENINV---SVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKV--EKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
4	PPA-I	3gbgA	0.183	0.944	3.092	threading_4	YINDYKMFWIDSGIAKLIDKVSYEINSSSIILLKKNSIQRFSLTSLSDENINV---SVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKKYNS--IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
5	HHPRED-l	3gbg_A	0.185	0.912	4.265	threading_5	INDYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLLSDNISVITISDSFIRSLKSYILG---------NKDLLNCEHNDIAVLSEVVNGFREINY-SDEFLKVFFSGFFSKVEKKYN--SIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
6	HHPRED-g	3gbg_A	0.190	0.928	3.683	threading_6	INDYKMFWIDSGIAK-LIDKVSYEINSSSIILLKKNSIQRFSLTLSDENINVSVITISDSFIRSLKSYILG-----NKDLLNCEHNDIAVLSEVVNGFREI-NYSDEFLKVFFSGFFSKVEKKYNS--IFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
7	SP3	3gbga	0.191	0.944	3.961	threading_7	YINDYKMFWIDSGIAKLIDKVSYEINSSSIILLKKNSIQRFSLTSLSDENINV---SVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEFLKVFFSGFFSKVEKK--YNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEYLFMLTGV---------
8	SAM-T99	3gbgA	0.209	0.904	3.124	threading_8	YINDYKMFWIDSGIAKLDKNCSYEINSSSIILLKKNSIQRFSLTSLSDEINVSVITISDSFIRSLKSYILGNKDLLLWNCEHNDIAVLSEVVNGFREINYSDEF--------LKVFFSGFFSKKKYNSIFITDDLDAMEKISCLVKSDITRNWRWADICGELRTNRMILKKELESRGVKFRELINSIRISYSISLMKTGEFKIKQIAYQSGFASVSYFSTVFKSTMNVAPSEY----------------
9	MUSTER	2k9sA	0.219	0.422	1.415	threading_9	-------------------------------------------------------------------------------------------------------------------------------------MDNRVREACQYISDHLADSFDIASVAQHVCLSPSRLSHLFRQQGISVLSWREDQRISQAKLLLSTTRMPIATVGRNVGFDDQLYFSRVFKKCTGASPSEFRAGCE-----------
10	SPARKS	3ooua	0.235	0.410	2.538	threading_10	--------------------------------------------------------------------------------------------------------------------------------------SPIIQNVLSYITEHFSEG-SLKTLGNDFHINAVYLGQLFQKEGEHFTDYLNRYRVNYAKEELLQTKDNLTIIAGKSGYTDA-YFYRQFKKHTGETPNRYRKIHQ-----------

Predicted Tertiary Structure


Download Model 1	Download Model 2	Download Model 3	Download Model 4	Download Model 5
TM-score=0.494 to 1d5yA SCOP code=a.4.1.8	TM-score=0.490 to 1d5yA SCOP code=a.4.1.8	TM-score=0.491 to 1d5yA SCOP code=a.4.1.8	TM-score=0.487 to 1d5yA SCOP code=a.4.1.8	TM-score=0.495 to 1d5yA SCOP code=a.4.1.8