Template-based Modeling Results for APPB_ECOLI

Submitted Primary Sequence

>Length 378
MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY
CCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCCHHHEHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEECCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEEEEEEECCHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCEECCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHEEEEEEEEEEEEECCHHHHHCCCCCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY
452232132000000000000000020000000000100133331130001000020301000000000000000020001000000000000000001111001121212323123000000000000000000000000011020211231201110101200000000000000000000000100020222002201300320000000000000000111120000001123121110011000010100100230101100000000000000001232420100000000000000000010011000111012000001102123210000000000000000001000001011202231034233323
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MFDYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARNDDERRIVINSVGAHWEGNQVWLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAGLVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVILQGGVWLQLKTVGVIHLRSQLATKRAALLVMLCFLLAGYWLWVGIDGFVLLAQDANGPSNPLMKLVAVLPGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGWGFLMASLMQFGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSYYKMWGRMTTETLRRNENELY
1	PROSPECT2	3a6pA1	0.114	0.955	1.693	threading_1	AMDQALCEQLVKAVTVMVPCGLRLAEKTQFGLQILEHVVKFSRLEKVYLKNSVTLNILEEENHIKDALSRIVVEWPDMLIELDTLSKQETQTELVMFILLRLAEDVVTFQTLPRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGLLEILCLLLNELIAVSRKGKLEDRKPLMVLFGDVAMHYILLKRLCQVLCALGNQLCALLGADSDVETPSNFGKYLE---SFLAFTTHPSQFLRSSTQMTWGALFRHEILSRDPLLLAIIPKYLRASMTNL-----VKMGFPSKTDSPSCEYSRFDFDSDEDFNAFFNSSRAQQGEVMRLAC---------RLDPKTSFKYQLSTF
2	PPA-I	3g61A4	0.080	0.796	1.072	threading_2	---GWKLTLVILAISPVLGLSAGIW------AKILSSFTDKELHAYAKAGAVAEEVLAA------IRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITA----------------NISMGAAFLLIYASYALAFWYGTSLVISKEYSLDEDVPPASFWRILKLNSFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSR-----LAVIFQNIANLGTGIIISLIYFE--------------------------NVLLVFSAIVFGAM---------------AVGQVSSFAPDY
3	PROSPECT2	1jdha	0.077	0.963	1.652	threading_3	SKKEASRHAIMRSPQMVSAIVRTMQNTNDVCTAGTLHNLSHHREGLLAIFKSVKMLGSPVDFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALVNIMRTYTYEKLLWTSVCSSNKPAIVEAGGMQALGLVQNCLWTLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHVGLIRNLALCPANHAPLRRLVQLLVRAHQDTQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELAQDKEA--------------AEAIEAEGARMS
4	PPA-I	3pblA1	0.107	0.669	1.000	threading_4	--------------------------------------------------------------------------YALSYCALILAIVFGNGLVCMAVLKE-------RALQT------TTNYLVVSLAVADLLVATLVMPWVVYLEVTGGVWNFSRICCDVFVTLDVMMCTASIWNLCAISIDRYTAVVMPVHYQHGTGQSSCRRVALMITAVWVLAFAVSCPLLFGFNTTGDPTVCSISNP---------DFVIYSSVVSFYLPFGVTVLVYARIYVVLKQRRRKVPLREKKATQMVAIVLGAFIVCWLPFLNTHCQTCHVSPELY------SATTWLGYVNSALNPVIYTTSC-----------------------
5	PROSPECT2	1ee4a	0.133	0.897	1.584	threading_5	QLNSDDMQEQLSATVKFRPIDVVIQAG---VVPRLVEFMRENEMLQLEAAWALTNIASGTSEQAIWALGNVAGDSTDYRDYVLQCNAMEPILSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLITLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLVAEDKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIAD--NRIIEVTLDALENILKMGEAD-----------------KEARGLNINENADFIEKAGGMEKI-----------------FNCQQNENDKF
6	PROSPECT2	1gw5b	0.078	0.979	1.570	threading_6	TNKKGEIFELKAELEAVKKVIAAMTVGKDVLFPDVVNCMQDNLELKKLVYLYLMNYAKSQPDMAIMAVNSFVKDCPLIRALAVRTMLCEPLPYVRKTAAVCVAKLHDINAQMVEDQGFLDSLRDLSNPMVVANAVAALSEISESHPNSNLLDLNPQNINKLLTALNECTEWGQIFILDCLVVLSAVKVLMKFLEMLLKKLAPPLVTLPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQANIAQVLAELKRKAVRAIGRCAIKVEQSAERCVSTLYVVQEAIVVIRDIFRKYPNKYESIIATLCENLDSLDEPDARAAMIWIVNADELLES--------FLEGFHDVKLFLKKPSET
7	PROSPECT2	1xm9A	0.076	0.833	1.567	threading_7	GLTIPKAVQYEKYQAIGAYYIQHTCFQDEAAAGALRNLVFRSTTNKLETVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSG-------WCVVDP------EVFFNATGCLRNLSSADAGRQTMRNY------------SGLIDSLMAYVQNCVAVENCMCVLHNLSYRLDAEVPTRYRQLEYNPKGSGWLYHSDAIRTYLNLMGKSKK-----------------DATLEACAGALQNLTASKGLMSSGMSQLIGLGLPQIARLLQSGNSDVVRSGASLLSNMSVMGNQVFPEVTRLLTSHT--------GNTSNSEDILSSACYTVRNLM-------------ASQPQLAKKELQGVL
8	MUSTER	1pw4A	0.152	0.902	0.768	threading_8	EID-PTYRRLRWQIFLGIFFGYAAY--LVKNFALAMPYLVESRGDLGFALSGIS--I-GNPRVFLPAGLILAAAVMLFMGFVPWATAVMFVLLFLCGWFQGMGWPPCGRT-SQGIVSVWNCAHNVGGGIPPLLFLLGMAWF--GLPPIEEYKNDTAKQIFMQYVLNKLLWYIAIANVFVYLLRYGILDWSPTVKHFLDKSSWAYFLYEYAGIPGTLLCGWMSDKVFR-------GNRGATGFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLIYGPVMLI-PKKAAGTAAGFTGLFGYLGGSVAAS---AIVGYTVDFFG---WD------GGFMVMIGGSILAVILL------IVVMIG--EKRRHEQLLQELV
9	SPARKS	2xwub	0.088	0.902	0.941	threading_9	TIDVNYSDVVPGLIGLIVQLADTVMFT----IGALSEWLADHPVMINSVLPLVLHALGNPEL--SVSSVSTLKKICRECKYDLPPYAANIVAVSQDVLMKQ-------IHKTSQCMWLMQALGFLLSALQVEEILKNLHSLISPYQLEAEEIPNPSNKLAIVHILGLLSNLFTTLDIPVVVVLQQVFQLIQNDAQVVEAVCAIFEKSVKTLLDDFAPVPQLCEMLGRMY---STIPQASALDLTRQLVHIFA---HEPAHF--PPIEALFLLVTSVTLTLFQQGPRDHPDIVDSFMQLLAQALKR----KPDLFRLDVKAVFQCAVLALKFPEPTVKASCGFFTELLPRC------------GEVEGKVVQEDGRMLL
10	PROSPECT2	1ejlI	0.112	0.942	1.560	threading_10	GTVNWSVEDIVKGIQATQAARKLLSREKQPLIPKFVSFLGKTDCSPFESAWALTNIASGTSEQTKAVVPAFISLLAHISEQAVWALGNIASAFRDLVIKHGAIDPLLALLAVPDLSTLACGYL--------RNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPALRAIGNIVTGTDEQTQKVIDAGALLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLL---SAKDTKIIQVILDAISNIFQAAE-----------KLGETEKLSIHENEFS

Predicted Tertiary Structure


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TM-score=0.890 to 1kpkA SCOP code=f.20.1.1	TM-score=0.541 to 1u6gC SCOP code=a.118.1.2	TM-score=0.424 to 1r6tA SCOP code=a.16.1.3	TM-score=0.414 to 1sziA SCOP code=a.24.23.1	TM-score=0.650 to 1ialA SCOP code=a.118.1.1