Template-based Modeling Results for APHA_ECOLI

Submitted Primary Sequence

>Length 237
MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Primary Sequence

Predicted Secondary Structure

>C-coil;H-helix;E-sheet
MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY
CCHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCHHHHHHHHHCCCCCEEEEHHHHHHHCCCCCCEEEEECCCCCEEECCCCEEECCEECCCCHHHHHCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCHHHHHHHHHCCEEEECCCHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCCCCCEEEECCCC
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted 3-state Secondary Structure Types

Predicted Solvent Accessibility

>0-buried to 9-exposed
MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY
442111010000000001011102122222212011002012312021000220232123322000000021000010200110322112312210322201220120022111133002200200143211000000223332320031012203021232110001133323221120012230200001001000002302030010011232323212311210210022244
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--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230

Download Predicted Solvent Accessibility

Top 10 Templates

Rank	Method	Template	Identity	Coverage	N-Zscore	Threading Alignment	MRKITQAISAVCLLFALNSSAVALASSPSPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY
1	MUSTER	1z88D	0.900	0.890	2.946	threading_1	--------------------------SPSTLNPGTNVAKLAEQAPVHWVSVAQIENSLTGRPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSDDYLKNPAFWEKMNNGWDEFSIPKEAARQLIDMHVRRGDSIYFVTGRSQTKTETVSKTLADNFHIPAANMNPVIFAGDKPEQNTRVQWLQEKNMRIFYGDSDNDITAARDCGIRGIRILRAANSTYKPLPQAGAFGEEVIVNSEY
2	SPARKS	1n8na	1.000	0.882	5.312	threading_2	----------------------------SPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY
3	PROSPECT2	1n8nA	1.000	0.882	3.419	threading_3	----------------------------SPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY
4	PPA-I	1z88D	0.900	0.890	6.156	threading_4	--------------------------SPSTLNPGTNVAKLAEQAPVHWVSVAQIENSLTGRPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSDDYLKNPAFWEKMNNGWDEFSIPKEAARQLIDMHVRRGDSIYFVTGRSQTKTETVSKTLADNFHIPAANMNPVIFAGDKPEQNTRVQWLQEKNMRIFYGDSDNDITAARDCGIRGIRILRAANSTYKPLPQAGAFGEEVIVNSEY
5	HHPRED-l	2b82_A	1.000	0.886	7.719	threading_5	--------------------------SPSPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSE-
6	HHPRED-g	2b82_A	1.000	0.890	5.700	threading_6	--------------------------SPSPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY
7	SP3	1n8na	1.000	0.882	5.050	threading_7	----------------------------SPLNPGTNVARLAEQAPIHWVSVAQIENSLAGRPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFWEKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTLADNFHIPATNMNPVIFAGDKPGQNTKSQWLQDKNIRIFYGDSDNDITAARDVGARGIRILRASNSTYKPLPQAGAFGEEVIVNSEY
8	SAM-T99	1z88D	0.900	0.890	7.071	threading_8	--------------------------SPSTLNPGTNVAKLAEQAPVHWVSVAQIENSLTGRPPMAVGFDIDDTVLFSSPGFWRGKKTYSPDSDDYLKNPAFWEKMNNGWDEFSIPKEAARQLIDMHVRRGDSIYFVTGRSQTKTETVSKTLADNFHIPAANMNPVIFAGDKPEQNTRVQWLQEKNMRIFYGDSDNDITAARDCGIRGIRILRAANSTYKPLPQAGAFGEEVIVNSEY
9	MUSTER	2i33A	0.163	0.882	1.867	threading_9	----------------VKLTDQQLMADLWYQTAGEMKALYYQGYNTGQLKLDAALAK-GTEKKPAIVLDLDETVLDNSPHQAMSVKTGKGY-------PYKWDDWINKAEAEALP--GSIDFLKYTESKGVDIYYISNRKTNQLDATIKNLERV-GAPQATKEHILLQDPKEKGEKRRELVSQHDIVLFFGDNLSDFTGFDGKSVKDRNQAVTDSKAQFPNPMYGDW-EGALYDYNF
10	SPARKS	2i33a	0.173	0.852	3.197	threading_10	----------------VKLTDQQLMADLWYQTAGEMKALYYQGYNTGQLKLDAALAK-GTEKKPAIVLDLDETVLDNSPHQAMS-------VKTGKGYPYKWDDWINKAEAEALPG--SIDFLKYTESKGVDIYYISNRKTNQLDATIKNLER-VGAPQATKEHILLQDPKEKGKRRELVSQTHDIVLFFGDNLSDFTGFDGKSVKDRNQAVTDSKAQ--------FGEKFIINPMY

Predicted Tertiary Structure


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TM-score=0.888 to 1z88D TM-score=0.936 to native SCOP code=c.108.1.12	TM-score=0.888 to 1z88D TM-score=0.936 to native SCOP code=c.108.1.12	TM-score=0.857 to 1z88D TM-score=0.907 to native SCOP code=c.108.1.12	TM-score=0.857 to 1z88D TM-score=0.907 to native SCOP code=c.108.1.12	TM-score=0.888 to 1z88D TM-score=0.936 to native SCOP code=c.108.1.12

Experimental Structure

Download 2b82A

SCOP code=c.108.1.12